fix amr_index default path

Microbial-Ecology-Group · Jul 28, 2023 · 4642b16 · 4642b16
1 parent db92c90
commit 4642b16
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/params.config b/params.config
@@ -28,7 +28,7 @@ params {
     kraken_db = null
 
     /* Location of amr index files with wildcard */
-    amr_index = "${base_dir}/data/amr/megares_database_v3.00.fasta*"
+    amr_index = "${baseDir}/data/amr/megares_database_v3.00.fasta*"
 
     /* Location of antimicrobial resistance (MEGARes) database */
     amr = "${baseDir}/data/amr/megares_database_v3.00.fasta"