Update so that apptainer correctly binds the directory with input data

NBISweden · Nov 6, 2024 · 4745749 · 4745749
1 parent f3bbd98
commit 4745749
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/config/slurm/profile/config_plugin_dardel.yaml b/config/slurm/profile/config_plugin_dardel.yaml
@@ -5,7 +5,7 @@ jobs: 100
 printshellcmds: true
 software-deployment-method: apptainer
 use-apptainer: True
-apptainer-args: "-B $PWD"
+apptainer-args: "-B /cfs/klemming/projects/supr/sllstoreXXXXXXXX:/cfs/klemming/projects/supr/sllstoreXXXXXXXX" # Update this path to the path to your project on Dardel where all input data is located (twice the same path)
 
 # slurm resources
 ## default-resources: applied to all jobs, overruled by resources defined below for jobs