Updated contents at 20231006-155307

NBISweden · Oct 6, 2023 · 21970fb · 21970fb
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diff --git a/2310-canvas/Dockerfile b/2310-canvas/Dockerfile
@@ -21,7 +21,7 @@ RUN apt-get update -y \
   && Rscript -e 'install.packages(c("bookdown","knitr","remotes","fontawesome","formattable","formatR","kableExtra","leaflet","pagedown","lubridate","markdown","rmarkdown","xaringan","yaml"),repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest");' \
   && mkdir /rmd
 
-RUN Rscript -e 'install.packages(c("tidyverse","nycflights13","vcd","patchwork","vioplot"),repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest");'
+RUN Rscript -e 'install.packages(c("tidyverse","nycflights13","vcd","patchwork","vioplot", "readxl"),repos = "https://packagemanager.posit.co/cran/__linux__/jammy/latest");'
 RUN Rscript -e 'remotes::install_github("mkierczak/mkteachr");'
 WORKDIR /rmd
 CMD Rscript -e "rmarkdown::render_site()"

diff --git a/2310-canvas/assets/footer-lab.Rmd b/2310-canvas/assets/footer-lab.Rmd
@@ -8,7 +8,7 @@ title: "&nbsp;"
 
 <div class="col-sm-8" style="text-align:left;vertical-align:middle;">
 <p class="small" style="color:#bdbdbd;">
-[NBIS](https://nbis.se/) • [SciLifeLab](https://www.scilifelab.se/)
+<b>2023</b> • [NBIS](https://nbis.se/) • [SciLifeLab](https://www.scilifelab.se/)
 </p>
 </div>
 

diff --git a/2310-canvas/assets/footer-slide.Rmd b/2310-canvas/assets/footer-slide.Rmd
@@ -1,6 +1,6 @@
 .end-text[
 <p class="smaller">
 <span class="small" style="line-height: 1.2;">Graphics from </span><img src="./assets/freepik.jpg" style="max-height:20px; vertical-align:middle;"><br>
-`r paste0("Created: ",format(Sys.time(),format='%d-%b-%Y'))` • <a href="https://www.scilifelab.se/">SciLifeLab</a> • <a href="https://nbis.se/">NBIS</a> 
+`r paste0("Created: ",format(Sys.time(),format='%d-%b-%Y'))` • <a href="https://www.scilifelab.se/">SciLifeLab</a> • <a href="https://nbis.se/">NBIS</a>
 </p>
 ]
diff --git a/2310-canvas/assets/lab.css b/2310-canvas/assets/lab.css
@@ -84,10 +84,6 @@ pre {
   font-size: 16px;
 }
 
-pre > code.sourceCode {
-    white-space: pre-wrap;
-}
-
 code {
   font-family: var(--font-code,"Menlo","Monaco", "Consolas","Liberation Mono", "Courier New", monospace);
   word-break: break-all;
@@ -594,7 +590,7 @@ div.chunk-title {
   border-left: 1px solid var(--color-border);
   border-right: 1px solid var(--color-border);
   border-radius: 4px;
-  padding: 0 0 0 10px;
+  padding: 2px 2px 2px 10px;
   margin-top: auto;
   margin-bottom: auto;
   color: white;
@@ -684,6 +680,7 @@ ul.nav a:hover {
   display: grid;
   grid-template-columns: 1fr 1fr;
   font-weight: 300;
+  margin-top: 2em;
 }
 
 .landing-title h1 {

diff --git a/2310-canvas/assets/slide.css b/2310-canvas/assets/slide.css
@@ -374,8 +374,9 @@ img, video, iframe {
 .remark-slide-content:before {
   content: url(logo.svg);
   float: right;
-  margin-top: 10px;
-  transform: scale(0.6);
+  margin-top: 15px;
+  transform: scale(0.7);
+}
 }
 
 /* image size classes */

diff --git a/2310-canvas/data/wfa_girls_p_0_5.xlsx b/2310-canvas/data/wfa_girls_p_0_5.xlsx
diff --git a/2310-canvas/home_info.html b/2310-canvas/home_info.html
@@ -180,8 +180,8 @@
 <p><br></p>
 <div id="location" class="section level2">
 <h2>Location</h2>
-<div id="htmlwidget-28c2d9059316c7d7c132" style="width:auto;height:450px;" class="leaflet html-widget "></div>
-<script type="application/json" data-for="htmlwidget-28c2d9059316c7d7c132">{"x":{"options":{"crs":{"crsClass":"L.CRS.EPSG3857","code":null,"proj4def":null,"projectedBounds":null,"options":{}}},"calls":[{"method":"addTiles","args":["http://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png",null,null,{"minZoom":0,"maxZoom":18,"tileSize":256,"subdomains":"abc","errorTileUrl":"","tms":false,"noWrap":false,"zoomOffset":0,"zoomReverse":false,"opacity":1,"zIndex":1,"detectRetina":false}]},{"method":"addMarkers","args":[59.841949,17.637073,null,null,null,{"interactive":true,"draggable":false,"keyboard":true,"title":"","alt":"","zIndexOffset":0,"opacity":1,"riseOnHover":false,"riseOffset":250},"<b>SciLifeLab<\/b><br>Entrance C11<br>Biomedicinskt centrum<br>Uppsala University<br>Husargatan 3<br>75237 Uppsala<br>Sweden",null,null,null,null,{"interactive":false,"permanent":false,"direction":"auto","opacity":1,"offset":[0,0],"textsize":"10px","textOnly":false,"className":"","sticky":true},null]}],"limits":{"lat":[59.841949,59.841949],"lng":[17.637073,17.637073]},"setView":[[59.841949,17.637073],15,[]]},"evals":[],"jsHooks":[]}</script>
+<div id="htmlwidget-85a2aaba22e868e83684" style="width:auto;height:450px;" class="leaflet html-widget "></div>
+<script type="application/json" data-for="htmlwidget-85a2aaba22e868e83684">{"x":{"options":{"crs":{"crsClass":"L.CRS.EPSG3857","code":null,"proj4def":null,"projectedBounds":null,"options":{}}},"calls":[{"method":"addTiles","args":["http://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png",null,null,{"minZoom":0,"maxZoom":18,"tileSize":256,"subdomains":"abc","errorTileUrl":"","tms":false,"noWrap":false,"zoomOffset":0,"zoomReverse":false,"opacity":1,"zIndex":1,"detectRetina":false}]},{"method":"addMarkers","args":[59.841949,17.637073,null,null,null,{"interactive":true,"draggable":false,"keyboard":true,"title":"","alt":"","zIndexOffset":0,"opacity":1,"riseOnHover":false,"riseOffset":250},"<b>SciLifeLab<\/b><br>Entrance C11<br>Biomedicinskt centrum<br>Uppsala University<br>Husargatan 3<br>75237 Uppsala<br>Sweden",null,null,null,null,{"interactive":false,"permanent":false,"direction":"auto","opacity":1,"offset":[0,0],"textsize":"10px","textOnly":false,"className":"","sticky":true},null]}],"limits":{"lat":[59.841949,59.841949],"lng":[17.637073,17.637073]},"setView":[[59.841949,17.637073],15,[]]},"evals":[],"jsHooks":[]}</script>
 </div>
 <div id="travel-info" class="section level2">
 <h2>Travel info</h2>

diff --git a/2310-canvas/home_precourse.html b/2310-canvas/home_precourse.html
@@ -200,8 +200,6 @@ <h3>Tools</h3>
 <p>It is NOT absolutely necessary to have Docker installed, but we are working on shipping the working course as a Docker container ready to run. In order to be able to use this functionality, please make sure you have <a href="https://www.docker.com/get-started" target="_blank">Docker Desktop</a> installed and running on your machine.</p>
 <p>  <strong>Install git</strong></p>
 <p>In order to use RStudio’s version control features, install <a href="https://git-scm.com/downloads" target="_blank">Git</a> on your machine. This step is also NOT necessary, but to our experience learning and using git makes your life much easier.</p>
-<p>  <strong>Install Zoom</strong></p>
-<p>Go to <a href="https://zoom.us" target="_blank">Zoom website</a> and follow installation instructions. Most likely, your University has already paid some pro plan and you should consult your local IT to get university account details.</p>
 <hr />
 </div>
 </div>