Updated contents at 20231004-212431

NBISweden · Oct 4, 2023 · c70f206 · c70f206
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diff --git a/2310-canvas/assets/header-lab.Rmd b/2310-canvas/assets/header-lab.Rmd
@@ -4,18 +4,13 @@
 # load libraries
 library(knitr) # runs pandoc
 library(bookdown) # for markdown
-library(captioner) # for table and figure captions
 library(fontawesome) # icons
 
 # fontawesome dependency
 fa <- rmarkdown::html_dependency_font_awesome()
 fa$attachment <- "fonts/fontawesome-webfont.ttf"
 htmltools::tagList(fa)
 
-# prepare captions
-tc <- captioner::captioner(prefix="<b>Tab. </b>")
-fc <- captioner::captioner(prefix="<b>Fig. </b>")
-
 # turn off terminal colors
 options(crayon.enabled = FALSE)
 

diff --git a/2310-canvas/home_content.html b/2310-canvas/home_content.html
@@ -31,9 +31,9 @@
 <script src="site_libs/navigation-1.1/tabsets.js"></script>
 <link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
 <script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
-<link href="site_libs/font-awesome-6.4.0/css/all.min.css" rel="stylesheet" />
-<link href="site_libs/font-awesome-6.4.0/css/v4-shims.min.css" rel="stylesheet" />
-<link id="font-awesome-1-attachment" rel="attachment" href="site_libs/font-awesome-6.4.0/fonts/fontawesome-webfont.ttf"/>
+<link href="site_libs/font-awesome-6.4.2/css/all.min.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet" />
+<link id="font-awesome-1-attachment" rel="attachment" href="site_libs/font-awesome-6.4.2/fonts/fontawesome-webfont.ttf"/>
 
 <style type="text/css">
   code{white-space: pre-wrap;}

diff --git a/2310-canvas/home_info.html b/2310-canvas/home_info.html
@@ -31,17 +31,17 @@
 <script src="site_libs/navigation-1.1/tabsets.js"></script>
 <link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
 <script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
-<link href="site_libs/font-awesome-6.4.0/css/all.min.css" rel="stylesheet" />
-<link href="site_libs/font-awesome-6.4.0/css/v4-shims.min.css" rel="stylesheet" />
-<link id="font-awesome-1-attachment" rel="attachment" href="site_libs/font-awesome-6.4.0/fonts/fontawesome-webfont.ttf"/>
+<link href="site_libs/font-awesome-6.4.2/css/all.min.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet" />
+<link id="font-awesome-1-attachment" rel="attachment" href="site_libs/font-awesome-6.4.2/fonts/fontawesome-webfont.ttf"/>
 <script src="site_libs/htmlwidgets-1.6.2/htmlwidgets.js"></script>
 <link href="site_libs/leaflet-1.3.1/leaflet.css" rel="stylesheet" />
 <script src="site_libs/leaflet-1.3.1/leaflet.js"></script>
 <link href="site_libs/leafletfix-1.0.0/leafletfix.css" rel="stylesheet" />
 <script src="site_libs/proj4-2.6.2/proj4.min.js"></script>
 <script src="site_libs/Proj4Leaflet-1.0.1/proj4leaflet.js"></script>
 <link href="site_libs/rstudio_leaflet-1.3.1/rstudio_leaflet.css" rel="stylesheet" />
-<script src="site_libs/leaflet-binding-2.1.2/leaflet.js"></script>
+<script src="site_libs/leaflet-binding-2.2.0/leaflet.js"></script>
 
 <style type="text/css">
   code{white-space: pre-wrap;}
@@ -180,8 +180,8 @@
 <p><br></p>
 <div id="location" class="section level2">
 <h2>Location</h2>
-<div id="htmlwidget-9d31836a56c2116bac47" style="width:auto;height:450px;" class="leaflet html-widget "></div>
-<script type="application/json" data-for="htmlwidget-9d31836a56c2116bac47">{"x":{"options":{"crs":{"crsClass":"L.CRS.EPSG3857","code":null,"proj4def":null,"projectedBounds":null,"options":{}}},"calls":[{"method":"addTiles","args":["http://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png",null,null,{"minZoom":0,"maxZoom":18,"tileSize":256,"subdomains":"abc","errorTileUrl":"","tms":false,"noWrap":false,"zoomOffset":0,"zoomReverse":false,"opacity":1,"zIndex":1,"detectRetina":false}]},{"method":"addMarkers","args":[59.841949,17.637073,null,null,null,{"interactive":true,"draggable":false,"keyboard":true,"title":"","alt":"","zIndexOffset":0,"opacity":1,"riseOnHover":false,"riseOffset":250},"<b>SciLifeLab<\/b><br>Entrance C11<br>Biomedicinskt centrum<br>Uppsala University<br>Husargatan 3<br>75237 Uppsala<br>Sweden",null,null,null,null,{"interactive":false,"permanent":false,"direction":"auto","opacity":1,"offset":[0,0],"textsize":"10px","textOnly":false,"className":"","sticky":true},null]}],"limits":{"lat":[59.841949,59.841949],"lng":[17.637073,17.637073]},"setView":[[59.841949,17.637073],15,[]]},"evals":[],"jsHooks":[]}</script>
+<div id="htmlwidget-9bf1a63219d692994a00" style="width:auto;height:450px;" class="leaflet html-widget "></div>
+<script type="application/json" data-for="htmlwidget-9bf1a63219d692994a00">{"x":{"options":{"crs":{"crsClass":"L.CRS.EPSG3857","code":null,"proj4def":null,"projectedBounds":null,"options":{}}},"calls":[{"method":"addTiles","args":["http://{s}.tile.openstreetmap.org/{z}/{x}/{y}.png",null,null,{"minZoom":0,"maxZoom":18,"tileSize":256,"subdomains":"abc","errorTileUrl":"","tms":false,"noWrap":false,"zoomOffset":0,"zoomReverse":false,"opacity":1,"zIndex":1,"detectRetina":false}]},{"method":"addMarkers","args":[59.841949,17.637073,null,null,null,{"interactive":true,"draggable":false,"keyboard":true,"title":"","alt":"","zIndexOffset":0,"opacity":1,"riseOnHover":false,"riseOffset":250},"<b>SciLifeLab<\/b><br>Entrance C11<br>Biomedicinskt centrum<br>Uppsala University<br>Husargatan 3<br>75237 Uppsala<br>Sweden",null,null,null,null,{"interactive":false,"permanent":false,"direction":"auto","opacity":1,"offset":[0,0],"textsize":"10px","textOnly":false,"className":"","sticky":true},null]}],"limits":{"lat":[59.841949,59.841949],"lng":[17.637073,17.637073]},"setView":[[59.841949,17.637073],15,[]]},"evals":[],"jsHooks":[]}</script>
 </div>
 <div id="travel-info" class="section level2">
 <h2>Travel info</h2>

diff --git a/2310-canvas/home_precourse.html b/2310-canvas/home_precourse.html
@@ -31,9 +31,9 @@
 <script src="site_libs/navigation-1.1/tabsets.js"></script>
 <link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
 <script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
-<link href="site_libs/font-awesome-6.4.0/css/all.min.css" rel="stylesheet" />
-<link href="site_libs/font-awesome-6.4.0/css/v4-shims.min.css" rel="stylesheet" />
-<link id="font-awesome-1-attachment" rel="attachment" href="site_libs/font-awesome-6.4.0/fonts/fontawesome-webfont.ttf"/>
+<link href="site_libs/font-awesome-6.4.2/css/all.min.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet" />
+<link id="font-awesome-1-attachment" rel="attachment" href="site_libs/font-awesome-6.4.2/fonts/fontawesome-webfont.ttf"/>
 
 <style type="text/css">
   code{white-space: pre-wrap;}

diff --git a/2310-canvas/home_schedule.html b/2310-canvas/home_schedule.html
@@ -31,9 +31,9 @@
 <script src="site_libs/navigation-1.1/tabsets.js"></script>
 <link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
 <script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
-<link href="site_libs/font-awesome-6.4.0/css/all.min.css" rel="stylesheet" />
-<link href="site_libs/font-awesome-6.4.0/css/v4-shims.min.css" rel="stylesheet" />
-<link id="font-awesome-1-attachment" rel="attachment" href="site_libs/font-awesome-6.4.0/fonts/fontawesome-webfont.ttf"/>
+<link href="site_libs/font-awesome-6.4.2/css/all.min.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet" />
+<link id="font-awesome-1-attachment" rel="attachment" href="site_libs/font-awesome-6.4.2/fonts/fontawesome-webfont.ttf"/>
 <script src="site_libs/kePrint-0.0.1/kePrint.js"></script>
 <link href="site_libs/lightable-0.0.1/lightable.css" rel="stylesheet" />
 

diff --git a/2310-canvas/index.html b/2310-canvas/index.html
@@ -31,9 +31,9 @@
 <script src="site_libs/navigation-1.1/tabsets.js"></script>
 <link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
 <script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
-<link href="site_libs/font-awesome-6.4.0/css/all.min.css" rel="stylesheet" />
-<link href="site_libs/font-awesome-6.4.0/css/v4-shims.min.css" rel="stylesheet" />
-<link id="font-awesome-1-attachment" rel="attachment" href="site_libs/font-awesome-6.4.0/fonts/fontawesome-webfont.ttf"/>
+<link href="site_libs/font-awesome-6.4.2/css/all.min.css" rel="stylesheet" />
+<link href="site_libs/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet" />
+<link id="font-awesome-1-attachment" rel="attachment" href="site_libs/font-awesome-6.4.2/fonts/fontawesome-webfont.ttf"/>
 
 <style type="text/css">
   code{white-space: pre-wrap;}
@@ -201,7 +201,7 @@ <h1>R Programming Foundations for Life Scientist</h1>
 <hr />
 <div class="landing-update">
 <p class="small" style="color:#bdbdbd;">
-Last updated on <svg aria-hidden="true" role="img" viewBox="0 0 448 512" style="height:1em;width:0.88em;vertical-align:-0.125em;margin-left:auto;margin-right:auto;font-size:inherit;fill:#bdbdbd;overflow:visible;position:relative;"><path d="M152 24c0-13.3-10.7-24-24-24s-24 10.7-24 24V64H64C28.7 64 0 92.7 0 128v16 48V448c0 35.3 28.7 64 64 64H384c35.3 0 64-28.7 64-64V192 144 128c0-35.3-28.7-64-64-64H344V24c0-13.3-10.7-24-24-24s-24 10.7-24 24V64H152V24zM48 192h80v56H48V192zm0 104h80v64H48V296zm128 0h96v64H176V296zm144 0h80v64H320V296zm80-48H320V192h80v56zm0 160v40c0 8.8-7.2 16-16 16H320V408h80zm-128 0v56H176V408h96zm-144 0v56H64c-8.8 0-16-7.2-16-16V408h80zM272 248H176V192h96v56z"/></svg> 16-Aug-2023 at <svg aria-hidden="true" role="img" viewBox="0 0 512 512" style="height:1em;width:1em;vertical-align:-0.125em;margin-left:auto;margin-right:auto;font-size:inherit;fill:#bdbdbd;overflow:visible;position:relative;"><path d="M464 256A208 208 0 1 1 48 256a208 208 0 1 1 416 0zM0 256a256 256 0 1 0 512 0A256 256 0 1 0 0 256zM232 120V256c0 8 4 15.5 10.7 20l96 64c11 7.4 25.9 4.4 33.3-6.7s4.4-25.9-6.7-33.3L280 243.2V120c0-13.3-10.7-24-24-24s-24 10.7-24 24z"/></svg> 14:17:43 .
+Last updated on <svg aria-hidden="true" role="img" viewBox="0 0 448 512" style="height:1em;width:0.88em;vertical-align:-0.125em;margin-left:auto;margin-right:auto;font-size:inherit;fill:#bdbdbd;overflow:visible;position:relative;"><path d="M152 24c0-13.3-10.7-24-24-24s-24 10.7-24 24V64H64C28.7 64 0 92.7 0 128v16 48V448c0 35.3 28.7 64 64 64H384c35.3 0 64-28.7 64-64V192 144 128c0-35.3-28.7-64-64-64H344V24c0-13.3-10.7-24-24-24s-24 10.7-24 24V64H152V24zM48 192h80v56H48V192zm0 104h80v64H48V296zm128 0h96v64H176V296zm144 0h80v64H320V296zm80-48H320V192h80v56zm0 160v40c0 8.8-7.2 16-16 16H320V408h80zm-128 0v56H176V408h96zm-144 0v56H64c-8.8 0-16-7.2-16-16V408h80zM272 248H176V192h96v56z"/></svg> 04-Oct-2023 at <svg aria-hidden="true" role="img" viewBox="0 0 512 512" style="height:1em;width:1em;vertical-align:-0.125em;margin-left:auto;margin-right:auto;font-size:inherit;fill:#bdbdbd;overflow:visible;position:relative;"><path d="M464 256A208 208 0 1 1 48 256a208 208 0 1 1 416 0zM0 256a256 256 0 1 0 512 0A256 256 0 1 0 0 256zM232 120V256c0 8 4 15.5 10.7 20l96 64c11 7.4 25.9 4.4 33.3-6.7s4.4-25.9-6.7-33.3L280 243.2V120c0-13.3-10.7-24-24-24s-24 10.7-24 24z"/></svg> 07:22:45 PM .
 </p>
 </div>
 </div>