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Add modulefile for Dogwood/Cactus #1073

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Apr 26, 2024
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2 changes: 1 addition & 1 deletion build.sh
Original file line number Diff line number Diff line change
Expand Up @@ -71,7 +71,7 @@ while getopts "p:t:c:hvdfa" opt; do
done

case ${BUILD_TARGET} in
hera | orion | hercules)
hera | orion | hercules | wcoss2)
echo "Building GDASApp on $BUILD_TARGET"
source $dir_root/ush/module-setup.sh
module use $dir_root/modulefiles
Expand Down
51 changes: 51 additions & 0 deletions modulefiles/GDAS/wcoss2.intel.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,51 @@
help([[
Load environment for running the GDAS application with Intel compilers and MPI.
]])

local pkgName = myModuleName()
local pkgVersion = myModuleVersion()
local pkgNameVer = myModuleFullName()

prepend_path("MODULEPATH", "/apps/dev/lmodules/core")

load("PrgEnv-intel/8.2.0")
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load("cmake/3.20.2")
load("craype")
load("cray-pals")
load("git/2.29.0")
load("intel/19.1.3.304")
load("cray-mpich/8.1.12")
load("hdf5/1.12.2")
load("netcdf/4.7.4")
load("udunits/2.2.28")
load("eigen/3.4.0")
load("boost/1.79.0")
load("gsl-lite/v0.40.0")
load("sp/2.4.0")
load("python/3.8.6")
load("ecbuild/3.7.0")
load("qhull/2020.2")
load("eckit/1.24.4")
load("fckit/0.11.0")
load("atlas/0.35.0")
load("nccmp")

-- hack for pybind11
setenv("pybind11_ROOT", "/apps/spack/python/3.8.6/intel/19.1.3.304/pjn2nzkjvqgmjw4hmyz43v5x4jbxjzpk/lib/python3.8/site-packages/pybind11/share/cmake/pybind11")

-- hack for wxflow
--prepend_path("PYTHONPATH", "/scratch1/NCEPDEV/da/python/gdasapp/wxflow/20240307/src")

local mpiexec = '/pe/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpirun'
local mpinproc = '-n'
setenv('MPIEXEC_EXEC', mpiexec)
setenv('MPIEXEC_NPROC', mpinproc)

setenv("CRTM_FIX","/lfs/h2/emc/da/noscrub/emc.da/GDASApp/fix/crtm/2.4.0")
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setenv("GDASAPP_TESTDATA","/lfs/h2/emc/da/noscrub/emc.da/GDASApp/data")
setenv("GDASAPP_UNIT_TEST_DATA_PATH", "/lfs/h2/emc/da/noscrub/emc.da/GDASApp/data/test")

whatis("Name: ".. pkgName)
whatis("Version: ".. pkgVersion)
whatis("Category: GDASApp")
whatis("Description: Load all libraries needed for GDASApp")
2 changes: 1 addition & 1 deletion sorc/ioda
Submodule ioda updated 50 files
+2 −2 CMakeLists.txt
+1 −0 share/ioda/yaml/iodatest_odb_oceansound.yaml
+1 −0 share/ioda/yaml/iodatest_odb_oceansound_truncate_profiles.yaml
+1 −0 share/ioda/yaml/iodatest_odb_sonde.yaml
+1 −0 share/ioda/yaml/iodatest_odb_sonde_history.yaml
+1 −0 share/ioda/yaml/iodatest_odb_sonde_mixed.yaml
+1 −0 share/ioda/yaml/iodatest_odb_sonde_time_displacement.yaml
+1 −0 share/ioda/yaml/iodatest_odb_sonde_truncate_profiles.yaml
+1 −0 share/ioda/yaml/iodatest_odb_sonde_write.yaml
+1 −0 share/ioda/yaml/iodatest_odb_sonde_write_mixed.yaml
+1 −0 share/ioda/yaml/iodatest_odb_surface.yaml
+1 −0 share/ioda/yaml/iodatest_odb_surfacesst.yaml
+2 −0 share/ioda/yaml/odb_oceansound_name_map.yaml
+2 −0 share/ioda/yaml/odb_sonde_name_map.yaml
+2 −0 share/ioda/yaml/odb_surface_name_map.yaml
+2 −0 share/ioda/yaml/odb_surfacesst_name_map.yaml
+2 −0 src/CMakeLists.txt
+0 −3 src/ObsDataIoParameters.h
+30 −0 src/engines/ioda/include/ioda/Engines/EngineUtils.h
+66 −12 src/engines/ioda/src/ioda/Engines/EngineUtils.cpp
+20 −18 src/engines/ioda/src/ioda/Engines/ODC/ODC.cpp
+3 −0 src/engines/ioda/src/ioda/Engines/ODC/OdbQueryParameters.h
+3 −3 src/engines/ioda/src/ioda/Engines/ReadScriptFile.cpp
+12 −15 src/ioPool/IoPoolBase.cpp
+17 −5 src/ioPool/IoPoolBase.h
+14 −10 src/ioPool/IoPoolParameters.h
+47 −0 src/ioPool/ReaderPoolBase.cpp
+16 −0 src/ioPool/ReaderPoolBase.h
+173 −50 src/ioPool/ReaderPoolUtils.cpp
+80 −9 src/ioPool/ReaderPoolUtils.h
+158 −0 src/ioPool/ReaderPrepInputFiles.cpp
+71 −0 src/ioPool/ReaderPrepInputFiles.h
+48 −133 src/ioPool/ReaderSinglePool.cpp
+0 −9 src/ioPool/ReaderSinglePool.h
+7 −13 src/ioPool/ReaderSinglePoolAllTasks.cpp
+4 −3 src/ioPool/ReaderSinglePoolAllTasks.h
+5 −1 src/mains/CMakeLists.txt
+19 −0 src/mains/buildInputFileSet.cc
+92 −0 src/mains/buildInputFileSet.h
+1 −1 src/python/pyiodautils/file_merge.py
+88 −4 test/CMakeLists.txt
+19 −0 test/testinput/iodatest_build_amsua_n19_file_set.yaml
+19 −0 test/testinput/iodatest_build_amsua_n19_file_set_mpi7.yaml
+18 −0 test/testinput/iodatest_build_gnssro_file_set.yaml
+18 −0 test/testinput/iodatest_build_gnssro_file_set_mpi7.yaml
+18 −0 test/testinput/iodatest_build_sondes_file_set.yaml
+18 −0 test/testinput/iodatest_build_sondes_file_set_mpi7.yaml
+1 −0 test/testinput/iodatest_odb_surface_with_query.yaml
+3 −6 test/testinput/iodatest_time_io_reader_pool_ext_file_prep.yaml
+3 −6 test/testinput/iodatest_time_io_reader_pool_ext_file_prep_mpi7.yaml
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