STY: fix style of new files with black/pre-commit

chx_packages_local.py

@@ -3,15 +3,10 @@
 import pickle as cpk
 
 import historydict
-from eiger_io.fs_handler import EigerImages
-from skimage.draw import line, line_aa, polygon
-
-# changes to current version of chx_packages.py
-# added load_dask_data in generic_functions
-
 
-#from pyCHX.chx_handlers import use_dask, use_pims
+# from pyCHX.chx_handlers import use_dask, use_pims
 from chx_handlers import use_dask, use_pims
+
 # from pyCHX.chx_libs import (
 from chx_libs import (
     EigerHandler,
@@ -36,6 +31,12 @@
     utils,
     warnings,
 )
+from eiger_io.fs_handler import EigerImages
+from skimage.draw import line, line_aa, polygon
+
+# changes to current version of chx_packages.py
+# added load_dask_data in generic_functions
+
 
 use_pims(db)  # use pims for importing eiger data, register_handler 'AD_EIGER2' and 'AD_EIGER'
 
@@ -48,6 +49,7 @@
     para_segment_compress_eigerdata,
     segment_compress_eigerdata,
 )
+
 # from pyCHX.chx_compress_analysis import (
 from chx_compress_analysis import (
     Multifile,
@@ -63,15 +65,20 @@
     plot_waterfallc,
     read_compressed_eigerdata,
 )
+
 # from pyCHX.chx_correlationc import Get_Pixel_Arrayc, auto_two_Arrayc, cal_g2c, get_pixelist_interp_iq
 from chx_correlationc import Get_Pixel_Arrayc, auto_two_Arrayc, cal_g2c, get_pixelist_interp_iq
+
 # from pyCHX.chx_correlationp import _one_time_process_errorp, auto_two_Arrayp, cal_g2p, cal_GPF, get_g2_from_ROI_GPF
 from chx_correlationp import _one_time_process_errorp, auto_two_Arrayp, cal_g2p, cal_GPF, get_g2_from_ROI_GPF
+
 # from pyCHX.chx_crosscor import CrossCorrelator2, run_para_ccorr_sym
 from chx_crosscor import CrossCorrelator2, run_para_ccorr_sym
-#from pyCHX.chx_generic_functions import (
+
+# from pyCHX.chx_generic_functions import (
 from chx_generic_functions import (
     R_2,
+    RemoveHot,
     apply_mask,
     average_array_withNan,
     check_bad_uids,
@@ -160,7 +167,6 @@
     psave_obj,
     read_dict_csv,
     refine_roi_mask,
-    RemoveHot,
     reverse_updown,
     ring_edges,
     run_time,
@@ -182,8 +188,13 @@
     update_roi_mask,
     validate_uid,
 )
+
 # from pyCHX.chx_olog import Attachment, LogEntry, update_olog_id, update_olog_uid, update_olog_uid_with_file
 from chx_olog import Attachment, LogEntry, update_olog_id, update_olog_uid, update_olog_uid_with_file
+
+# from pyCHX.chx_outlier_detection import (
+from chx_outlier_detection import is_outlier, outlier_mask
+
 # from pyCHX.chx_specklecp import (
 from chx_specklecp import (
     get_binned_his_std,
@@ -197,28 +208,30 @@
     xsvsc,
     xsvsp,
 )
+
 # from pyCH.chx_xpcs_xsvs_jupyter_V1 import(
-from chx_xpcs_xsvs_jupyter_V1 import(
-    get_t_iqc_uids,
-    plot_t_iqtMq2,
-    plot_t_iqc_uids,
-    plot_entries_from_csvlist,
-    plot_entries_from_uids,
-    get_iq_from_uids,
-    wait_func,
-    wait_data_acquistion_finish,
-    get_uids_by_range,
-    get_uids_in_time_period,
-    do_compress_on_line,
-    realtime_xpcs_analysis,
+from chx_xpcs_xsvs_jupyter_V1 import (
     compress_multi_uids,
-    get_two_time_mulit_uids,
-    get_series_g2_from_g12,
+    do_compress_on_line,
     get_fra_num_by_dose,
+    get_iq_from_uids,
+    get_series_g2_from_g12,
     get_series_one_time_mulit_uids,
+    get_t_iqc_uids,
+    get_two_time_mulit_uids,
+    get_uids_by_range,
+    get_uids_in_time_period,
     plot_dose_g2,
+    plot_entries_from_csvlist,
+    plot_entries_from_uids,
+    plot_t_iqc_uids,
+    plot_t_iqtMq2,
+    realtime_xpcs_analysis,
     run_xpcs_xsvs_single,
+    wait_data_acquistion_finish,
+    wait_func,
 )
+
 # from pyCHX.Create_Report import (
 from Create_Report import (
     create_multi_pdf_reports_for_uids,
@@ -228,8 +241,10 @@
     extract_xpcs_results_from_h5,
     make_pdf_report,
 )
-#from pyCHX.DataGonio import qphiavg
+
+# from pyCHX.DataGonio import qphiavg
 from DataGonio import qphiavg
+
 # from pyCHX.SAXS import (
 from SAXS import (
     fit_form_factor,
@@ -240,7 +255,8 @@
     poly_sphere_form_factor_intensity,
     show_saxs_qmap,
 )
-#from pyCHX.Two_Time_Correlation_Function import (
+
+# from pyCHX.Two_Time_Correlation_Function import (
 from Two_Time_Correlation_Function import (
     get_aged_g2_from_g12,
     get_aged_g2_from_g12q,
@@ -249,6 +265,7 @@
     rotate_g12q_to_rectangle,
     show_C12,
 )
+
 # from pyCHX.XPCS_GiSAXS import (
 from XPCS_GiSAXS import (
     cal_1d_qr,
@@ -274,6 +291,7 @@
     show_qzr_map,
     show_qzr_roi,
 )
+
 # from pyCHX.XPCS_SAXS import (
 from XPCS_SAXS import (
     cal_g2,
@@ -295,8 +313,3 @@
     recover_img_from_iq,
     save_lists,
 )
-#from pyCHX.chx_outlier_detection import (
-from chx_outlier_detection import (
-    is_outlier,
-    outlier_mask
-)