Cohort Definition Calculation Designer

OHDSI · Dec 5, 2023 · 8501843 · 8501843
1 parent 596cde6
commit 8501843
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Showing 14 changed files with 154 additions and 7 deletions.
diff --git a/js/components/cohortbuilder/CriteriaTypes/Measurement.js b/js/components/cohortbuilder/CriteriaTypes/Measurement.js
@@ -1,4 +1,4 @@
-define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text'], function (ko, Criteria, Range, Concept, Text) {
+define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputTypes/Concept', '../InputTypes/Text', '../InputTypes/Calculation'], function (ko, Criteria, Range, Concept, Text, Calculation) {
 
 	function Measurement(data, conceptSets) {
 		var self = this;
@@ -65,6 +65,8 @@ define(['knockout', './Criteria', '../InputTypes/Range','conceptpicker/InputType
 			return new Concept(d);
 		})));
 
+		self.MeasurementOperand = ko.observable(data.MeasurementOperand != null ? new Calculation(data.MeasurementOperand, conceptSets) : null);
+
 	}
 
 	Measurement.prototype = new Criteria();

diff --git a/js/components/cohortbuilder/InputTypes/Calculation.js b/js/components/cohortbuilder/InputTypes/Calculation.js
@@ -0,0 +1,26 @@
+define([
+  "knockout",
+  "../CriteriaTypes/Measurement",
+  "../CriteriaTypes",
+  "../InputTypes/Range",
+], function (
+  ko,
+  Measurement,
+  CriteriaTypes,
+  Range,
+){
+  function Calculation(data, conceptSets) {
+    var self = this;
+    data = data || {};
+
+    // var measurement = new Measurement((data.Measurement && data.Measurement.Measurement) ? data.Measurement.Measurement : {}, conceptSets);
+    // self.Measurement = ko.observable({Measurement: measurement});
+    self.Measurement = ko.observable({ Measurement: new CriteriaTypes.Measurement((data.Measurement && data.Measurement.Measurement) ? data.Measurement.Measurement : {}, conceptSets) });
+    self.Operator = ko.observable(data.Operator || "-");
+    self.Limit = ko.observable(data.Limit || "First");
+    self.SameVisit = ko.observable(!!data.SameVisit);
+    self.ValueAsNumber = ko.observable(new Range(data.ValueAsNumber));
+  }
+
+  return Calculation;
+});
diff --git a/js/components/cohortbuilder/components.js b/js/components/cohortbuilder/components.js
@@ -98,6 +98,9 @@ define(function (require, exports) {
 	var locationRegion = require('./components/LocationRegion');
 	ko.components.register('location-region-criteria', locationRegion);
 
+	var measurementOperand = require("./components/MeasurementOperand");
+	ko.components.register("measurement-operand-criteria", measurementOperand);
+
 	require('./components/WindowedCriteria');
 
 });
diff --git a/js/components/cohortbuilder/components/Measurement.js b/js/components/cohortbuilder/components/Measurement.js
@@ -4,15 +4,16 @@ define([
   "../utils",
   "../InputTypes/Range",
   "../InputTypes/DateAdjustment",
+  "../InputTypes/Calculation",
   "../CriteriaGroup",
   "text!./MeasurementTemplate.html",
   "../const"
-], function (ko, options, utils, Range, DateAdjustment, CriteriaGroup, template, constants) {
+], function (ko, options, utils, Range, DateAdjustment, Calculation, CriteriaGroup, template, constants) {
   function MeasurementViewModel(params) {
     var self = this;
 
     self.expression = ko.utils.unwrapObservable(params.expression);
-    self.Criteria = params.criteria.Measurement;
+    self.Criteria = ko.unwrap(params.criteria).Measurement;
     self.options = options;
 
     self.addActions = [
@@ -160,6 +161,15 @@ define([
             self.Criteria.MeasurementSourceConcept(ko.observable());
         },
       },
+      {
+        ...constants.measurementAttributes.addMeasurementOperand,
+        selected: false,
+        action: () => {
+          if (self.Criteria.MeasurementOperand() == null) {
+            self.Criteria.MeasurementOperand(new Calculation({}, self.expression.ConceptSets));
+          }
+        }
+      },
       {
         ...constants.measurementAttributes.addNested,
         selected: false,

diff --git a/js/components/cohortbuilder/components/MeasurementOperand.js b/js/components/cohortbuilder/components/MeasurementOperand.js
@@ -0,0 +1,28 @@
+define([
+  "knockout",
+  "../options",
+  "text!./MeasurementOperandTemplate.html",
+  "less!./MeasurementOperand.less",
+], function (
+  ko,
+  options,
+  template,
+) {
+
+  function MeasurementOperandViewModel(params) {
+    var self = this;
+    self.expression = ko.unwrap(params.expression);
+    var criteria = ko.unwrap(params.criteria);
+    self.Measurement = criteria.Measurement;
+    self.Operator = criteria.Operator;
+    self.Limit = criteria.Limit;
+    self.SameVisit = criteria.SameVisit;
+    self.ValueAsNumber = criteria.ValueAsNumber;
+    self.options = options;
+  }
+
+  return {
+    viewModel: MeasurementOperandViewModel,
+    template: template,
+  };
+});
diff --git a/js/components/cohortbuilder/components/MeasurementOperand.less b/js/components/cohortbuilder/components/MeasurementOperand.less
@@ -0,0 +1,3 @@
+.measurement-operand {
+  margin-bottom: 0.5rem;
+}
diff --git a/js/components/cohortbuilder/components/MeasurementOperandTemplate.html b/js/components/cohortbuilder/components/MeasurementOperandTemplate.html
@@ -0,0 +1,15 @@
+<div class="criteriaSection">
+    <div class="measurement-operand">
+        <select data-bind="options: $component.options.operatorOptions, value: $component.Operator"></select>
+        <select data-bind="options: $component.options.eventsLimit, optionsText: 'name', optionsValue: 'id', value: $component.Limit"></select>
+        <span data-bind="text: ko.i18n('components.conditionMeasurement.conditionMeasurement_32', 'of')">of</span>
+    </div>
+    <measurement-criteria params="{ criteria: ko.unwrap($component.Measurement), expression: ko.unwrap($component.expression) }"></measurement-criteria>
+    <div class="measurement-operand">
+        <span data-bind="text: ko.i18n('components.conditionMeasurement.conditionMeasurementText_31', 'restricted to the same visit')"></span> <input type="checkbox" data-bind="checked: $component.SameVisit" />
+    </div>
+    <div>
+        <span data-bind="text: ko.i18n('components.conditionMeasurement.conditionMeasurementText_6', 'with calculated value as number')"></span>
+        <numeric-range params="Range: ValueAsNumber"></numeric-range>
+    </div>
+</div>
diff --git a/js/components/cohortbuilder/components/MeasurementTemplate.html b/js/components/cohortbuilder/components/MeasurementTemplate.html
@@ -194,6 +194,12 @@
 					<criteria-group params="{expression: $component.expression, group: CorrelatedCriteria, indexMessage: $component.indexMessage}"></criteria-group>
 				</td>
 			</tr>
+			<tr data-bind="if: MeasurementOperand() != null, visible: MeasurementOperand() != null">
+				<td><i data-bind="click: function() { $component.removeCriterion('MeasurementOperand') }, title: ko.i18n('common.remove', 'Remmove')" class="fa fa-times" /></td>
+				<td>
+					<measurement-operand-criteria params="{expression: $component.expression, criteria: ko.unwrap(MeasurementOperand)}" ></measurement-operand-criteria>
+				</td>
+			</tr>
 		</table>
 	</div>
 </div>
diff --git a/js/components/cohortbuilder/const.js b/js/components/cohortbuilder/const.js
@@ -1062,7 +1062,12 @@ define(["knockout"], function (ko) {
       descriptionGroup: 'const.eventsList.addLocationRegion.desc_group',
       defaultDescriptionGroup: 'Find patients within geographical area.',
     },
-
+    addMeasurementOperand: {
+        titleMeasurement: 'const.eventsList.addMeasurementOperand.title_measurement',
+        defaultTitleMeasurement: 'Add Calculation',
+        descriptionMeasurement: 'const.eventsList.addMeasurementOperand.desc_measurement',
+        defaultDescriptionMeasurement: 'Add calculated value based on a Measurement',
+    },
   };
 
   function setCriteria(criteria) {
@@ -1235,7 +1240,8 @@ define(["knockout"], function (ko) {
     'addRangeHighRatio',
     'addProviderSpecialty',
     'addSourceConcept',
-    'addNested'
+    'addMeasurementOperand',
+    'addNested',
   ];
   const drugexposureAttributesList = [
     'addDateAdjustment',

diff --git a/js/components/cohortbuilder/options.js b/js/components/cohortbuilder/options.js
@@ -103,7 +103,18 @@ define(["knockout"], function (ko) {
 			name: ko.i18n('options.eventEnds', 'event ends'),
 			value: true
 		}]
-
+
+    options.operatorOptions = [
+      '+', '-', '*', '/'
+    ];
+
+    options.eventsLimit = [{
+      name: ko.i18n('options.earliestEvents', 'earliest event'),
+      id: "First"
+    }, {
+      name: ko.i18n('options.latestEvents', 'latest event'),
+      id: "Last"
+    }];
 
     return options;
 });
diff --git a/js/components/cohortdefinitionviewer/components/MeasurementOperand.js b/js/components/cohortdefinitionviewer/components/MeasurementOperand.js
@@ -0,0 +1,23 @@
+define([
+  "knockout",
+  "text!./MeasurementOperandTemplate.html",
+], function (
+  ko,
+  template,
+){
+  function MeasurementOperandViewModel(params) {
+    var self = this;
+
+    self.expression = ko.unwrap(params.expression);
+    var criteria = ko.unwrap(params.criteria);
+    self.Criteria = criteria;
+    const measurement = criteria.Measurement;
+    self.CodesetId = measurement.Measurement && measurement.Measurement.CodesetId;
+    self.ValueAsNumber = criteria.ValueAsNumber;
+  }
+
+  return {
+    viewModel: MeasurementOperandViewModel,
+    template: template,
+  };
+});
diff --git a/js/components/cohortdefinitionviewer/components/MeasurementOperandTemplate.html b/js/components/cohortdefinitionviewer/components/MeasurementOperandTemplate.html
@@ -0,0 +1,9 @@
+<!-- ko with: Criteria -->
+<span data-bind="text: Operator"></span> <span data-bind="text: ko.i18n('components.conditionMeasurement.conditionMeasurementText_1', 'a measurement of')"></span>
+<conceptset-reference params="{conceptSetId: $component.CodesetId, conceptSets: $component.expression.ConceptSets, defaultName: ko.i18n('components.conditionMeasurement.anyMeasurement', 'Any Measurement')}"></conceptset-reference>
+<!-- ko if: SameVisit -->
+<span data-bind="text:ko.i18n('components.conditionMeasurement.conditionMeasurementText_30', 'at the same visit')"></span>
+<!-- /ko -->
+<span data-bind="text: ko.i18n('components.conditionMeasurement.conditionMeasurementText_6', 'with value as number')"></span>
+<numeric-range-viewer params="Range: $component.ValueAsNumber"></numeric-range-viewer>
+<!-- /ko -->
diff --git a/js/components/cohortdefinitionviewer/components/MeasurementTemplate.html b/js/components/cohortdefinitionviewer/components/MeasurementTemplate.html
@@ -87,6 +87,9 @@
 		<span data-bind="text: ko.i18n('components.conditionMeasurement.conditionMeasurementText_28', 'visit occurrence is any of:')"></span>
 		 <concept-list-viewer params="ConceptList: ko.utils.unwrapObservable(VisitType)"></concept-list-viewer></li>
 <!-- /ko -->
+<!-- ko if: ko.unwrap(MeasurementOperand) != null -->
+	<measurement-operand-viewer params="{expression: $component.expression, criteria: ko.unwrap(MeasurementOperand)}"></measurement-operand-viewer>
+<!-- /ko -->
 <!-- ko if: ko.utils.unwrapObservable(CorrelatedCriteria) != null -->
 		<criteria-group-viewer params="{expression: $component.expression, group: CorrelatedCriteria}"></criteria-group-viewer>	
 <!-- /ko -->

diff --git a/js/components/cohortdefinitionviewer/main.js b/js/components/cohortdefinitionviewer/main.js
@@ -86,5 +86,7 @@ define(function (require, exports) {
 
 	var locationRegion = require('./components/LocationRegion');
 	ko.components.register('location-region-viewer', locationRegion);
-
+
+	var measurementOperand = require("./components/MeasurementOperand");
+	ko.components.register("measurement-operand-viewer", measurementOperand);
 });