og 0.4 and visomop 0.5 compatability

OHDSI · Nov 24, 2024 · 23a055e · 23a055e
1 parent ea30962
commit 23a055e
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Showing 3 changed files with 4 additions and 3 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -35,7 +35,7 @@ Imports:
     dplyr,
     glue,
     magrittr,
-    omopgenerics (>= 0.2.1),
+    omopgenerics (>= 0.4.0),
     PatientProfiles (>= 1.2.0),
     purrr,
     rlang,

diff --git a/data/benchmarkData.rda b/data/benchmarkData.rda
diff --git a/vignettes/a11_benchmark.Rmd b/vignettes/a11_benchmark.Rmd
@@ -30,6 +30,7 @@ library(tidyr)
 library(gt)
 library(scales)
 library(CohortConstructor)
+library(gt)
 
 niceOverlapLabels <- function(labels) {
   new_labels <- gsub("_", " ", gsub(" and.*|cc_", "", labels))
@@ -213,7 +214,7 @@ The table below depicts the total time it took to create the nine cohorts when u
 ```{r}
 header_prefix <- "[header]Time by tool (minutes)\n[header_level]"
 benchmarkData$time_domain |>
-  gtTable(colsToMergeRows = "all_columns") |>
+  formatTable() |> 
   tab_style(style = list(cell_fill(color = "#e1e1e1"), cell_text(weight = "bold")), 
             locations = cells_column_labels()) |>
   tab_style(style = list(cell_text(weight = "bold")), 
@@ -226,7 +227,7 @@ Cohorts are often stratified in studies. With Atlas cohort definitions, each str
 
 ```{r}
 benchmarkData$time_strata |>
-  gtTable(colsToMergeRows = "all_columns") |>
+  formatTable() |>
   tab_style(style = list(cell_fill(color = "#e1e1e1"), cell_text(weight = "bold")), 
             locations = cells_column_labels()) |>
   tab_style(style = list(cell_text(weight = "bold")),