Merge pull request #335 from OHDSI/benchmark_chunk

Uncomment benchmark conflicitve chunk

DESCRIPTION

@@ -16,7 +16,7 @@ Authors@R: c(
     role = c("aut"), comment = c(ORCID = "0000-0002-0847-4855")),
     person("Xihang", "Chen", , "[email protected]", 
     role = c("aut"), comment = c(ORCID = "0009-0001-8112-8959")),
-    person("Kim", "Lopez", , "[email protected]", 
+    person("Kim", "Lopez-Guell", , "[email protected]", 
     role = "aut", comment = c(ORCID = "0000-0002-8462-8668")),
     person("Elin", "Rowlands", , "[email protected]", 
     role = "aut", comment = c(ORCID = "0009-0005-5166-0417")))

vignettes/a11_benchmark.Rmd

@@ -119,18 +119,18 @@ benchmarkData$details |>
 We also computed the overlap between patients in CIRCE and CohortConstructor cohorts, with results shown in the plot below:
 
 ```{r, fig.width=10, fig.height=7}
-# benchmarkData$comparison |>
-#   plotCohortOverlap() +
-#   scale_y_discrete(labels = niceOverlapLabels) +
-#   theme(
-#     legend.text = element_text(size = 10),
-#     strip.text = element_text(size = 14),
-#     axis.text.x = element_text(size = 12),  
-#     axis.title.x = element_text(size = 14),  
-#     axis.title.y = element_text(size = 14)   
-#   ) +
-#   facet_wrap("cdm_name") +
-#   scale_fill_discrete(labels = c("CIRCE", "Both", "CohortConstructor"))
+benchmarkData$comparison |>
+  plotCohortOverlap() +
+  scale_y_discrete(labels = niceOverlapLabels) +
+  theme(
+    legend.text = element_text(size = 10),
+    strip.text = element_text(size = 14),
+    axis.text.x = element_text(size = 12),
+    axis.title.x = element_text(size = 14),
+    axis.title.y = element_text(size = 14)
+  ) +
+  facet_wrap("cdm_name") +
+  scale_fill_discrete(labels = c("CIRCE", "Both", "CohortConstructor"))
 ```
 
 # Performance