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Use Posit Package Manager (PPM) for installation #34

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Use Posit Package Manager (PPM) for installation #34

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6 changes: 3 additions & 3 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ RUN apt-get update && apt-get install -y openjdk-11-jdk liblzma-dev libbz2-dev l
&& rm -rf /var/lib/apt/lists/*

# install utility R packages
RUN install2.r \
RUN install2.r --error --skipinstalled --repos "https://packagemanager.posit.co/cran/latest" \
openssl \
httr \
xml2 \
Expand All @@ -23,7 +23,7 @@ RUN --mount=type=secret,id=build_github_pat \
&& cp /tmp/Renviron /usr/local/lib/R/etc/Renviron

# install useful R libraries to help RStudio users to create/use their own GitHub Personal Access Token
RUN install2.r \
RUN install2.r --error --skipinstalled --repos "https://packagemanager.posit.co/cran/latest" \
usethis \
gitcreds \
&& rm -rf /tmp/download_packages/ /tmp/*.rds
Expand All @@ -38,7 +38,7 @@ EOF

# install shiny and other R packages used by the OHDSI PatientLevelPrediction R package viewPLP() function
# and additional model related R packages
RUN install2.r \
RUN install2.r --error --skipinstalled --repos "https://packagemanager.posit.co/cran/latest" \
DT \
markdown \
plotly \
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