The JCdmBuilder is a Java program that offers various tools that can be used when contructing a data in the OMOP Common Data Model (CDM). It can also be used to transform some specific observational datasets from their native formats and schemas into the CDM.
- This builder supports the following ETLs:
- Healthcare Cost and Utilization Project (HCUP) - Nationwide Inpatient Sample (NIS) to CDM version 4
- Healthcare Cost and Utilization Project (HCUP) - Nationwide Inpatient Sample (NIS) to CDM version 5
- You can also load data in CDM format from CSV files into the database
- Creating the database structure and indices for CDM versions 4 or 5
- Loading the vocabulary from files into the database
- Automatically creating condition and drug eras
- Supports SQL Server, Oracle and PostgreSQL
- Command line interface for automated execution
JCdmBuilder is a Java program.
- Java
None
- Under the Releases tab, download the latest JCDMBuilder jar file.
- Double-click on the jar file to start the application.
There is also a command-line-interface. Type java -jar JCDMBuilder_v?.?.?.jar -usage for more information.
- User Guide: To be developed
- Developer questions/comments/feedback: OHDSI Forum
- We use the GitHub issue tracker for all bugs/issues/enhancements
JCdmBuilder is licensed under Apache License 2.0
Alpha
Janssen Pharmaceutical Research & Development, LLC