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Standardization #180

Merged
merged 23 commits into from
Aug 7, 2023
Merged

Standardization #180

merged 23 commits into from
Aug 7, 2023

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nhall6
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@nhall6 nhall6 commented May 5, 2023

Fixed cohort generator module for attrition table and attrition plot. This module still needs to add in the standard data table components module for all tables, but pulling for now to get a working version out there

@nhall6 nhall6 requested a review from jreps May 5, 2023 16:58
jreps added 2 commits May 23, 2023 16:18
- updating SCCS table to use component
- fixing cohort generator test fails
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codecov bot commented May 23, 2023

Codecov Report

Merging #180 (00842e1) into develop (9aab34d) will increase coverage by 1.86%.
Report is 68 commits behind head on develop.
The diff coverage is 80.36%.

@@             Coverage Diff             @@
##           develop     #180      +/-   ##
===========================================
+ Coverage    80.76%   82.62%   +1.86%     
===========================================
  Files           66       70       +4     
  Lines        15910    17033    +1123     
===========================================
+ Hits         12849    14073    +1224     
+ Misses        3061     2960     -101     
Files Changed Coverage Δ
R/about-main.R 70.58% <ø> (+70.58%) ⬆️
R/cohort-diagnostics-inclusionRules.R 92.63% <ø> (ø)
R/cohort-diagnostics-timeDistributions.R 97.46% <ø> (ø)
R/helper-getPredictionProtocol.R 0.00% <0.00%> (ø)
R/helpers-sccsPlots.R 90.49% <0.00%> (-0.06%) ⬇️
R/sccs-results.R 98.16% <ø> (ø)
R/helpers-componentsCreateCustomColDefList.R 4.00% <4.00%> (ø)
R/sccs-results-full.R 34.09% <34.09%> (ø)
R/data-diagnostic-summary.R 48.71% <50.00%> (+6.21%) ⬆️
R/sccs-diagnosticsSummary.R 56.03% <56.03%> (ø)
... and 56 more

jreps added 14 commits May 23, 2023 17:27
- adding selection options to SCCS diagnostics
- added summary diagnostic to CM and SCCS
- added evidence synth diagnostics
- adding some sticky columns to make it easier to explore results
removing shared_balance_diagnostic from diagnostics
- replaced plp design and model buttons with action dropdown button
- updated tests
- renamed tablePrefix to plpTablePrefix in Prediction to prepare for shared settings object across modules
- renamed mySchema to schema in Prediction to standardized and prepare for shared settings object across modules
- renamed description to  characterization
- renamed estimation to cohort-method
- updated inputs to prediction
- updating modules so they all use the same inputs in resultDatabaseSettings (this can now be shared across modules)
- updating names to match analysis package names
updated interface
updated interface
- minor updates to cohort diagnostic to enable shared database table
updating version
- standardizing cohort method
- standardizing sccs
@jreps jreps merged commit 9105cee into develop Aug 7, 2023
4 of 5 checks passed
@jreps jreps deleted the standardization branch September 8, 2023 18:10
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2 participants