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Develop #324
Commits on Feb 5, 2024
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Commits on Feb 12, 2024
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temp fix for CohortMethod module automatically opening help link - disabling link
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Commits on Feb 16, 2024
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- added message when generating - added trycatch when target cohort json has issues (subset?) - added chunk names for debugging
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Commits on Feb 22, 2024
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Commits on Feb 23, 2024
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fixing plot color palette to work for a higher number of dbs in stand…
…ard plots and to be colorblind-friendly
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splitting up column definition for evidence synth cohort method and sccs
splitting up column definition for evidence synth cohort method and sccs
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Merge pull request #260 from OHDSI/es_sccs_cm_dynamic_load
Fixes for query and module load
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Merge branch 'es_split_cm_sccs' of https://github.com/OHDSI/OhdsiShin…
…yModules into es_split_cm_sccs
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Merge pull request #259 from OHDSI/es_sccs_cm_dynamic_load
Dynamic module load
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Commits on Feb 26, 2024
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Merge pull request #258 from OHDSI/incidence_plot_fixes
Incidence plot fixes
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Merge pull request #255 from OHDSI/issue_173
updating documentation on the html help files for all modules
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Commits on Mar 1, 2024
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Update characterization-main.R
fixing wrong position of selectVal = F causing tab to not show in characterization if 'Target Viewer' is not run.
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Commits on Mar 14, 2024
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Commits on Mar 15, 2024
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Commits on Mar 22, 2024
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Commits on Mar 26, 2024
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Commits on Mar 28, 2024
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Commits on Apr 1, 2024
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Commits on Apr 2, 2024
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Merge pull request #269 from OHDSI/about-updates
About module updates to content and UI
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Commits on Apr 3, 2024
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Commits on Apr 5, 2024
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Commits on Apr 9, 2024
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Commits on Apr 10, 2024
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Commits on Apr 11, 2024
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Commits on Apr 12, 2024
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Commits on Apr 19, 2024
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Fixes and optimisations for cd load up on postgres servers causing ha…
…ngs when using DBI functions
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Commits on Apr 23, 2024
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Merge branch 'hotfix-3.1.3' into develop
# Conflicts: # DESCRIPTION # NEWS.md # docs/404.html # docs/authors.html # docs/index.html # docs/pkgdown.yml # man/OhdsiShinyModules.Rd
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Commits on Apr 25, 2024
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Commits on Apr 26, 2024
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Merge branch 'hotfix-2.1.14' into develop
# Conflicts: # DESCRIPTION # NEWS.md
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Commits on May 2, 2024
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adding example app in extra folder and example Eunomia result data
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Commits on May 3, 2024
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Commits on May 6, 2024
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Merge pull request #281 from OHDSI/issue-265
Adding database filter to results selection to address issue #265
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Merge pull request #280 from OHDSI/cm-covariate-balance-table
CM covariate balance table addition after primary key generation
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Commits on May 8, 2024
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Commits on May 9, 2024
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- adding estimation module that includes CM/SCCS/Evidence synthesis
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- adding evidence synth into SCCS - adding plots for SCCS and CM
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- optimizing sccs negative control plot - removing prints
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Commits on May 17, 2024
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Commits on May 20, 2024
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Merge pull request #283 from OHDSI/removing-help-sections
remove help & information sections in most modules due to About modul...
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Commits on May 21, 2024
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Update characterization-incidence.R
- adding code to use CI TAR lookup if available
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Commits on May 22, 2024
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Update characterization-caseSeries.R
restricting case series to during covariates
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Commits on May 23, 2024
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Update characterization-riskFactors.R
fixing multiple washout and min obs bug in risk factors
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Commits on May 28, 2024
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Update cohort-diagnostics-main.R
Get table names faile when schema specified
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Update cohort-diagnostics-main.R
Get table names faile when schema specified
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Commits on Jun 1, 2024
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Commits on Jun 3, 2024
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Merge branch 'estimation-updated' of https://github.com/OHDSI/OhdsiSh…
…inyModules into estimation-updated
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Commits on Jun 4, 2024
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Commits on Jun 6, 2024
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adding box to show selected tar/database for RF and case series.
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Update characterization-dechallengeRechallenge.R
updating warning for dechal-rechal
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Update characterization-dechallengeRechallenge.R
- only display warning when there are warnings
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Merge branch 'estimation-updated' of https://github.com/OHDSI/OhdsiSh…
…inyModules into estimation-updated
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Commits on Jun 7, 2024
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Commits on Jun 11, 2024
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- fixing tar changing before generate in case series - fixing columns showing in selection that should be hidden
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- updating csv export to excel export with a details sheet
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adding details to exported results
adding details to exported results for characterization cohorts and databases
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Commits on Jun 12, 2024
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Update components-data-viewer.R
fixing actions not being includes as it is an extra column that is added outside the coldDef
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Update characterization-caseSeries.R
- adding details to case-series download
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Merge pull request #287 from OHDSI/pooled_connection_tablenames
Fix issue with pooled connection
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Commits on Jun 13, 2024
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updating data downloads for char tables, fixing cohort names in CI, adding caption to custom CI plot
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Commits on Jun 14, 2024
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- adding missing shiny:: - updating code to get T and Os for SCCS so it removed negative controls
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Commits on Jun 20, 2024
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Commits on Jun 28, 2024
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- fixed bug with control estimates plot not showing all results - added ease value to control estimate plot - added validation checks to print informative reason for missing plots
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error handling for estimation plots
replacing estimation plot error message with useful notification
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- removing old sccs and cohort method files - making estimation options be ordered by cohort name - adding indication column into sccs diagnostics - updating estimation outcome input to have the search options
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Commits on Jul 2, 2024
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- updating characterization tests and fixing issues identified by tests
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Commits on Jul 9, 2024
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Commits on Jul 10, 2024
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- passing tests 78% coverage - cleaning checks but still some notes
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Commits on Jul 15, 2024
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Merge pull request #286 from OHDSI/shiny-pool-issue
Update cohort-diagnostics-main.R
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Merge branch 'develop' into hotfix-2.1.5-develop-merge
# Conflicts: # DESCRIPTION # NEWS.md # R/OhdsiShinyModules.R # _pkgdown.yml # docs/articles/AddingShinyModules.html # docs/articles/index.html # docs/news/index.html # docs/reference/LargeDataTable.html # docs/reference/OhdsiShinyModules.html # docs/reference/aboutHelperFile.html # docs/reference/aboutServer.html # docs/reference/aboutViewer.html # docs/reference/characterizationAggregateFeaturesServer.html # docs/reference/characterizationAggregateFeaturesViewer.html # docs/reference/characterizationDechallengeRechallengeServer.html # docs/reference/characterizationDechallengeRechallengeViewer.html # docs/reference/characterizationHelperFile.html # docs/reference/characterizationIncidenceServer.html # docs/reference/characterizationIncidenceViewer.html # docs/reference/characterizationServer.html # docs/reference/characterizationTableServer.html # docs/reference/characterizationTableViewer.html # docs/reference/characterizationTimeToEventServer.html # docs/reference/characterizationTimeToEventViewer.html # docs/reference/characterizationViewer.html # docs/reference/cohortCountsModule.html # docs/reference/cohortCountsView.html # docs/reference/cohortDefinitionsModule.html # docs/reference/cohortDefinitionsView.html # docs/reference/cohortDiagCharacterizationView.html # docs/reference/cohortDiagnosticsHelperFile.html # docs/reference/cohortDiagnosticsServer.html # docs/reference/cohortDiagnosticsView.html # docs/reference/cohortGeneratorHelperFile.html # docs/reference/cohortGeneratorServer.html # docs/reference/cohortGeneratorViewer.html # docs/reference/cohortMethodAttritionServer.html # docs/reference/cohortMethodAttritionViewer.html # docs/reference/cohortMethodCovariateBalanceServer.html # docs/reference/cohortMethodCovariateBalanceViewer.html # docs/reference/cohortMethodDiagnosticsSummaryServer.html # docs/reference/cohortMethodDiagnosticsSummaryViewer.html # docs/reference/cohortMethodHelperFile.html # docs/reference/cohortMethodKaplanMeierServer.html # docs/reference/cohortMethodKaplanMeierViewer.html # docs/reference/cohortMethodPopulationCharacteristicsServer.html # docs/reference/cohortMethodPopulationCharacteristicsViewer.html # docs/reference/cohortMethodPowerServer.html # docs/reference/cohortMethodPowerViewer.html # docs/reference/cohortMethodPropensityModelServer.html # docs/reference/cohortMethodPropensityModelViewer.html # docs/reference/cohortMethodPropensityScoreDistServer.html # docs/reference/cohortMethodPropensityScoreDistViewer.html # docs/reference/cohortMethodResultSummaryServer.html # docs/reference/cohortMethodResultSummaryViewer.html # docs/reference/cohortMethodServer.html # docs/reference/cohortMethodSystematicErrorServer.html # docs/reference/cohortMethodSystematicErrorViewer.html # docs/reference/cohortMethodViewer.html # docs/reference/cohortOverlapView.html # docs/reference/compareCohortCharacterizationView.html # docs/reference/conceptsInDataSourceView.html # docs/reference/createCdDatabaseDataSource.html # docs/reference/createCustomColDefList.html # docs/reference/createLargeSqlQueryDt.html # 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Merge pull request #305 from OHDSI/hotfix-2.1.5-develop-merge
Hotfix 2.1.5 develop merge
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- fixing tests - updates for Characterization v1.1.0 - updating example app
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Merge pull request #310 from OHDSI/estimation-updated-cohortIncidence
Estimation updated cohort incidence
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- updating test database for new CohortIncidence - fixing tests for new CohortIncidence
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fixing check issues due to cohort incidence
fixing check issues due to cohort incidence
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- adding hot fixes from main - adding incidence results into example app
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Update characterization-riskFactors.R
fixing minor bug in risk factor that happens when there is multiple outcomeWashoutdays
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Fixing issue #314 - adding T, C, and O IDs to the table to allow bett…
…er filtering to users
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adding global fuzzy string matching to table search
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- updating Characterization for new censoring - adding counts to risk factor view
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Merge pull request #316 from OHDSI/prerelease-issue#315
Fixing issue #315 , diagonal line along x = y
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Merge pull request #317 from OHDSI/prerelease-issue#314
Fixing issue #314 - adding T, C, and O IDs to the table to allow better filtering capabilities for users in large studies
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- updating version ready for release - updating docs - updating readme
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Merge pull request #321 from OHDSI/prerelease-issue#307
addressing issue #307
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Merge pull request #297 from OHDSI/nhall6-author-updates
Update DESCRIPTION
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Update characterization-riskFactors.R
updating as setting id is now a character
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