package maintenance

OHDSI · Oct 9, 2023 · 12d65c7 · 12d65c7
1 parent 8fe2378
commit 12d65c7
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Showing 28 changed files with 46 additions and 37 deletions.
diff --git a/R/Phenotypes.R b/R/Phenotypes.R
@@ -122,10 +122,14 @@ getPhenotypeLog <- function(cohortIds = NULL,
     cohorts <- cohorts |>
       dplyr::filter(!.data$isReferenceCohort == 1) |>
       dplyr::filter(
-        stringr::str_detect(string = tolower(.data$status),
-                            pattern = "pending") |
-          stringr::str_detect(string = tolower(.data$status),
-                              pattern = "accepted")
+        stringr::str_detect(
+          string = tolower(.data$status),
+          pattern = "pending"
+        ) |
+          stringr::str_detect(
+            string = tolower(.data$status),
+            pattern = "accepted"
+          )
       ) |>
       dplyr::filter(
         stringr::str_detect(

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/CohortDefinitionSubmissionRequirements.html b/docs/articles/CohortDefinitionSubmissionRequirements.html
diff --git a/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html b/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html
diff --git a/docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary.html b/docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary.html
diff --git a/docs/articles/GuidanceOnClinicalDescriptionForConditionPhenotypes.html b/docs/articles/GuidanceOnClinicalDescriptionForConditionPhenotypes.html
diff --git a/docs/articles/GuidanceOnCohortDefinitionSetRObject.html b/docs/articles/GuidanceOnCohortDefinitionSetRObject.html
diff --git a/docs/articles/GuidanceOnLiteratureReview.html b/docs/articles/GuidanceOnLiteratureReview.html
diff --git a/docs/articles/GuidanceOnPerformingPeerReview.html b/docs/articles/GuidanceOnPerformingPeerReview.html
diff --git a/docs/articles/GuidanceOnWritingAnEvaluationReport.html b/docs/articles/GuidanceOnWritingAnEvaluationReport.html
diff --git a/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html b/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html
diff --git a/docs/articles/HowToUsePhenotypeLibraryRPackage.html b/docs/articles/HowToUsePhenotypeLibraryRPackage.html
diff --git a/docs/articles/ReservedWordsWithSpecialMeaningToPhenotypers.html b/docs/articles/ReservedWordsWithSpecialMeaningToPhenotypers.html
diff --git a/docs/articles/SubmittedCohortDefinitions.html b/docs/articles/SubmittedCohortDefinitions.html
diff --git a/docs/articles/ValidityChecksForCohortDefinitions.html b/docs/articles/ValidityChecksForCohortDefinitions.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -15,5 +15,5 @@ articles:
   ReservedWordsWithSpecialMeaningToPhenotypers: ReservedWordsWithSpecialMeaningToPhenotypers.html
   SubmittedCohortDefinitions: SubmittedCohortDefinitions.html
   ValidityChecksForCohortDefinitions: ValidityChecksForCohortDefinitions.html
-last_built: 2023-10-09T14:52Z
+last_built: 2023-10-09T17:51Z
 
diff --git a/docs/reference/PhenotypeLibrary-package.html b/docs/reference/PhenotypeLibrary-package.html
diff --git a/docs/reference/getPhenotypeLog.html b/docs/reference/getPhenotypeLog.html
diff --git a/docs/reference/getPlCohortDefinitionSet.html b/docs/reference/getPlCohortDefinitionSet.html
diff --git a/docs/reference/getPlConceptDefinitionSet.html b/docs/reference/getPlConceptDefinitionSet.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/listPhenotypes.html b/docs/reference/listPhenotypes.html
diff --git a/extras/PhenotypeLibrary.pdf b/extras/PhenotypeLibrary.pdf
diff --git a/inst/doc/HowToUsePhenotypeLibraryRPackage.pdf b/inst/doc/HowToUsePhenotypeLibraryRPackage.pdf