Release v3.28.1

* Bug fix * Release version 3.28.1
OHDSI · Oct 9, 2023 · 1d2341c · 1d2341c
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Showing 30 changed files with 44 additions and 35 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: PhenotypeLibrary
 Type: Package
 Title: The OHDSI Phenotype Library
-Version: 3.28.0
+Version: 3.28.1
 Date: 2023-10-09
 Author: Gowtham Rao [aut, cre]
 Maintainer: Gowtham Rao <[email protected]>

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,7 @@
+PhenotypeLibrary 3.28.1
+======================
+Bug fix with getPhenotypeLog()
+
 PhenotypeLibrary 3.28.0
 ======================
 Accepted Cohorts: No cohorts were accepted in this release.

diff --git a/R/Phenotypes.R b/R/Phenotypes.R
@@ -51,7 +51,7 @@ getPlCohortDefinitionSet <- function(cohortIds) {
   checkmate::assertIntegerish(cohortIds, min.len = 1, add = errorMessages)
   checkmate::reportAssertions(collection = errorMessages)
 
-  cohorts <- getPhenotypeLog() |>
+  cohorts <- getPhenotypeLog(showHidden = TRUE) |>
     dplyr::filter(.data$cohortId %in% cohortIds) |>
     dplyr::select(
       "cohortId",

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/CohortDefinitionSubmissionRequirements.html b/docs/articles/CohortDefinitionSubmissionRequirements.html
diff --git a/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html b/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html
diff --git a/docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary.html b/docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary.html
diff --git a/docs/articles/GuidanceOnClinicalDescriptionForConditionPhenotypes.html b/docs/articles/GuidanceOnClinicalDescriptionForConditionPhenotypes.html
diff --git a/docs/articles/GuidanceOnCohortDefinitionSetRObject.html b/docs/articles/GuidanceOnCohortDefinitionSetRObject.html
diff --git a/docs/articles/GuidanceOnLiteratureReview.html b/docs/articles/GuidanceOnLiteratureReview.html
diff --git a/docs/articles/GuidanceOnPerformingPeerReview.html b/docs/articles/GuidanceOnPerformingPeerReview.html
diff --git a/docs/articles/GuidanceOnWritingAnEvaluationReport.html b/docs/articles/GuidanceOnWritingAnEvaluationReport.html
diff --git a/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html b/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html
diff --git a/docs/articles/HowToUsePhenotypeLibraryRPackage.html b/docs/articles/HowToUsePhenotypeLibraryRPackage.html
diff --git a/docs/articles/ReservedWordsWithSpecialMeaningToPhenotypers.html b/docs/articles/ReservedWordsWithSpecialMeaningToPhenotypers.html
diff --git a/docs/articles/SubmittedCohortDefinitions.html b/docs/articles/SubmittedCohortDefinitions.html
diff --git a/docs/articles/ValidityChecksForCohortDefinitions.html b/docs/articles/ValidityChecksForCohortDefinitions.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -15,5 +15,5 @@ articles:
   ReservedWordsWithSpecialMeaningToPhenotypers: ReservedWordsWithSpecialMeaningToPhenotypers.html
   SubmittedCohortDefinitions: SubmittedCohortDefinitions.html
   ValidityChecksForCohortDefinitions: ValidityChecksForCohortDefinitions.html
-last_built: 2023-10-09T19:47Z
+last_built: 2023-10-09T21:15Z
 
diff --git a/docs/reference/PhenotypeLibrary-package.html b/docs/reference/PhenotypeLibrary-package.html
diff --git a/docs/reference/getPhenotypeLog.html b/docs/reference/getPhenotypeLog.html
diff --git a/docs/reference/getPlCohortDefinitionSet.html b/docs/reference/getPlCohortDefinitionSet.html
diff --git a/docs/reference/getPlConceptDefinitionSet.html b/docs/reference/getPlConceptDefinitionSet.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/listPhenotypes.html b/docs/reference/listPhenotypes.html
diff --git a/extras/PhenotypeLibrary.pdf b/extras/PhenotypeLibrary.pdf
diff --git a/inst/doc/HowToUsePhenotypeLibraryRPackage.pdf b/inst/doc/HowToUsePhenotypeLibraryRPackage.pdf