Release version 3.26.1

* Ensures cohorts that are withdrawn or deprecated, do not appear in log * Update function getPhenotypeLog * package maintenance
OHDSI · Oct 9, 2023 · bb6bf8f · bb6bf8f
1 parent ab9bf84
commit bb6bf8f
Show file tree

Hide file tree

Showing 34 changed files with 221 additions and 259 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: PhenotypeLibrary
 Type: Package
 Title: The OHDSI Phenotype Library
-Version: 3.26.0
+Version: 3.27.0
 Date: 2023-10-09
 Author: Gowtham Rao [aut, cre]
 Maintainer: Gowtham Rao <[email protected]>

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,9 @@
+PhenotypeLibrary 3.27.0
+======================
+Accepted Cohorts: No cohorts were accepted in this release.
+
+New Cohorts: No new cohorts were added in this release.
+
 PhenotypeLibrary 3.26.0
 ======================
 Accepted Cohorts: No cohorts were accepted in this release.

diff --git a/R/Phenotypes.R b/R/Phenotypes.R
@@ -130,6 +130,20 @@ getPhenotypeLog <- function(cohortIds = NULL,
             string = tolower(.data$status),
             pattern = "accepted"
           )
+      ) |>
+      dplyr::filter(
+        stringr::str_detect(
+          string = .data$cohortName,
+          pattern = stringr::fixed("[W]"),
+          negate = TRUE
+        )
+      ) |>
+      dplyr::filter(
+        stringr::str_detect(
+          string = .data$cohortName,
+          pattern = stringr::fixed("[D]"),
+          negate = TRUE
+        )
       )
   }
 

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/CohortDefinitionSubmissionRequirements.html b/docs/articles/CohortDefinitionSubmissionRequirements.html
diff --git a/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html b/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html
diff --git a/docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary.html b/docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary.html
diff --git a/docs/articles/GuidanceOnClinicalDescriptionForConditionPhenotypes.html b/docs/articles/GuidanceOnClinicalDescriptionForConditionPhenotypes.html
diff --git a/docs/articles/GuidanceOnCohortDefinitionSetRObject.html b/docs/articles/GuidanceOnCohortDefinitionSetRObject.html
diff --git a/docs/articles/GuidanceOnLiteratureReview.html b/docs/articles/GuidanceOnLiteratureReview.html
diff --git a/docs/articles/GuidanceOnPerformingPeerReview.html b/docs/articles/GuidanceOnPerformingPeerReview.html
diff --git a/docs/articles/GuidanceOnWritingAnEvaluationReport.html b/docs/articles/GuidanceOnWritingAnEvaluationReport.html
diff --git a/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html b/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html
diff --git a/docs/articles/HowToUsePhenotypeLibraryRPackage.html b/docs/articles/HowToUsePhenotypeLibraryRPackage.html
diff --git a/docs/articles/ReservedWordsWithSpecialMeaningToPhenotypers.html b/docs/articles/ReservedWordsWithSpecialMeaningToPhenotypers.html
diff --git a/docs/articles/SubmittedCohortDefinitions.html b/docs/articles/SubmittedCohortDefinitions.html
diff --git a/docs/articles/ValidityChecksForCohortDefinitions.html b/docs/articles/ValidityChecksForCohortDefinitions.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -15,5 +15,5 @@ articles:
   ReservedWordsWithSpecialMeaningToPhenotypers: ReservedWordsWithSpecialMeaningToPhenotypers.html
   SubmittedCohortDefinitions: SubmittedCohortDefinitions.html
   ValidityChecksForCohortDefinitions: ValidityChecksForCohortDefinitions.html
-last_built: 2023-10-09T14:52Z
+last_built: 2023-10-09T17:51Z
 
diff --git a/docs/reference/PhenotypeLibrary-package.html b/docs/reference/PhenotypeLibrary-package.html
diff --git a/docs/reference/getPhenotypeLog.html b/docs/reference/getPhenotypeLog.html
diff --git a/docs/reference/getPlCohortDefinitionSet.html b/docs/reference/getPlCohortDefinitionSet.html
diff --git a/docs/reference/getPlConceptDefinitionSet.html b/docs/reference/getPlConceptDefinitionSet.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/listPhenotypes.html b/docs/reference/listPhenotypes.html
diff --git a/extras/PhenotypeLibrary.pdf b/extras/PhenotypeLibrary.pdf