Merge pull request #20 from OHDSI/develop

Develop

DESCRIPTION

@@ -1,14 +1,14 @@
 Package: Ulysses
 Title: Automate OHDSI Study Setup
-Version: 0.0.4
+Version: 0.0.5
 Authors@R: 
     person("Martin", "Lavallee", , "[email protected]", role = c("aut", "cre"))
 Description: Automates setup of OHDSI study and provides functions to assist on improving organization
     and communication of a study. 
 License: Apache License (>= 2)
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1
 Imports: 
     cli,
     crayon,

NAMESPACE

@@ -11,12 +11,18 @@ export(checkConfig)
 export(checkDatabaseCredential)
 export(cohortManifest)
 export(defaultCredentials)
-export(importCredentialsToConfig)
+export(getHadesWideLock)
+export(importAtlasCohorts)
+export(importAtlasConceptSets)
 export(importImages)
 export(initConfig)
+export(initConfigUsingKeyring)
+export(initConfigUsingTable)
+export(initCredentialsKeyring)
+export(initCredentialsTable)
 export(isOhdsiStudy)
 export(makeAnalysisPlan)
-export(makeAnalysisScript)
+export(makeAnalysisTask)
 export(makeCaprScript)
 export(makeCohortDetails)
 export(makeContributionGuidelines)
@@ -27,14 +33,18 @@ export(makeMigrationScript)
 export(makeNews)
 export(makeReadMe)
 export(makeResultsReport)
+export(makeStrategusTask)
 export(makeWebApiScript)
-export(moduleTable)
 export(newOhdsiStudy)
+export(openCredentials)
 export(previewStudyHub)
 export(publishStudyToRepository)
 export(retrieveStudySettings)
+export(runTaskInBackground)
+export(setAtlasCredentials)
 export(setCredential)
 export(setMultipleCredentials)
+export(setStrategusInstantiatedFolder)
 export(setStudyAuthors)
 export(setStudyDescription)
 export(setStudyInfo)

NEWS.md

@@ -1,3 +1,10 @@
+Ulysses 0.0.5
+=============
+* Add functions to import credentials
+* Add functions to import ATLAS assets
+* Write vignettes to creds and ATLAS 
+* add folder cohorts/conceptSets/json
+
 Ulysses 0.0.4
 =============
 * Finalize Directory