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Humann profiling #30

Merged
merged 10 commits into from
Oct 25, 2024
Merged

Humann profiling #30

merged 10 commits into from
Oct 25, 2024

Commits on Aug 13, 2024

  1. fix: add threads to metaphlan+bowtie, fix headers on cumulative stat … 

    …files
    @rroutsong
    rroutsong committed Aug 13, 2024
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  2. Merge branch 'main' into humann_profiling

    @rroutsong
    rroutsong committed Aug 13, 2024
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Commits on Aug 21, 2024

  1. fix: add optimizing options to drep rule

    @rroutsong
    rroutsong committed Aug 21, 2024
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  2. feat: use parallelised mash sketch drep

    @rroutsong
    rroutsong committed Aug 21, 2024
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Commits on Aug 22, 2024

  1. fix: scale down memory for drep

    @rroutsong
    rroutsong committed Aug 22, 2024
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  2. feat: add deep profile flag for turning off and on humann unaligned s… 

    …earch
    @rroutsong
    rroutsong committed Aug 22, 2024
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  3. feat: move to filtered uniref 90 db

    @rroutsong
    rroutsong committed Aug 22, 2024
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  4. fix: DRY

    @rroutsong
    rroutsong committed Aug 22, 2024
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Commits on Aug 23, 2024

  1. fix: make translated unaligned search on by default

    @rroutsong
    rroutsong committed Aug 23, 2024
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Commits on Aug 26, 2024

  1. fix: escape awk cmd

    @rroutsong
    rroutsong committed Aug 26, 2024
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