Upgrades to Petrosian and Petrosian Corrections [v0.5.0 Core]

.gitignore

@@ -46,6 +46,7 @@ nosetests.xml
 coverage.xml
 *.cover
 .hypothesis/
+*test_output_dir*
 
 # Translations
 *.mo

.readthedocs.yaml

@@ -7,7 +7,10 @@ version: 2
 
 conda:
   environment: environment.yml
-
+
+sphinx:
+  builder: html
+  configuration: docs/conf.py  # This should point to your conf.py
 
 python:
   version: 3.8

CITATION.rst

@@ -8,7 +8,7 @@ Publications
 |AJ tag| |zonodo tag| |ascl tag|
 
 If you would like to cite PetroFit for a publication, please use the acknowledgments below.
-Given the intimate relationship between PetroFit and Photutils, we ask that you also cite
+Given the close relationship between PetroFit and Photutils, we ask that you also cite
 Photutils:
 
 .. code-block:: text

docs/_static/css/custom.css

@@ -44,7 +44,11 @@
 
 .rst-content pre.literal-block, .rst-content div[class^='highlight'] pre, .rst-content .linenodiv pre {
     /*color of code blocks*/
-    background-color: #f8f8f8
+    background-color: #ffffff;
+}
+
+.rst-content code.literal, .rst-content tt.literal {
+    color: #414042;
 }
 
 h1, h2, .rst-content .toctree-wrapper p.caption, h3, h4, h5, h6, legend {
@@ -57,4 +61,3 @@ h1, h2, .rst-content .toctree-wrapper p.caption, h3, h4, h5, h6, legend {
     /*color of nav at top when the window is narrow*/
     background: linear-gradient(90deg, #00B0F0 0%, #8D00ED 100%);
 }
-

docs/api_reference.rst

@@ -4,13 +4,7 @@
 API
 ===
 
-.. automodapi:: petrofit.correction
-    :no-inheritance-diagram:
-
-.. automodapi:: petrofit.modeling.fitting
-    :no-inheritance-diagram:
-
-.. automodapi:: petrofit.modeling.models
+.. automodapi:: petrofit.modeling
     :no-inheritance-diagram:
     :skip: Nuker2D
     :skip: sersic_enclosed_model

docs/conf.py

@@ -76,7 +76,7 @@
 # -- Project information ------------------------------------------------------
 
 # This does not *have* to match the package name, but typically does
-project = "PetroFit" #setup_cfg['name']
+project = "PetroFit"
 author = setup_cfg['author']
 copyright = '{0}, {1}'.format(
     datetime.datetime.now().year, setup_cfg['author'])
@@ -124,28 +124,6 @@
 html_static_path = ['_static']
 html_css_files = ["css/custom.css"]
 
-#     'logotext1': 'petrofit',  # white,  semi-bold
-#     'logotext2': '',  # orange, light
-#     'logotext3': ':docs'   # white,  light
-#     }
-
-
-# Custom sidebar templates, maps document names to template names.
-#html_sidebars = {}
-
-# The name of an image file (relative to this directory) to place at the top
-# of the sidebar.
-#html_logo = ''
-
-# The name of an image file (within the static path) to use as favicon of the
-# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
-# pixels large.
-#html_favicon = ''
-
-# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
-# using the given strftime format.
-#html_last_updated_fmt = ''
-
 # The name for this set of Sphinx documents.  If None, it defaults to
 # "<project> v<release> documentation".
 html_title = '{0} v{1}'.format(project, release)
@@ -196,29 +174,3 @@
 ]
 linkcheck_timeout = 180
 linkcheck_anchors = False
-
-# -- Turn on nitpicky mode for sphinx (to warn about references not found) ----
-#
-# nitpicky = True
-# nitpick_ignore = []
-#
-# Some warnings are impossible to suppress, and you can list specific references
-# that should be ignored in a nitpick-exceptions file which should be inside
-# the docs/ directory. The format of the file should be:
-#
-# <type> <class>
-#
-# for example:
-#
-# py:class astropy.io.votable.tree.Element
-# py:class astropy.io.votable.tree.SimpleElement
-# py:class astropy.io.votable.tree.SimpleElementWithContent
-#
-# Uncomment the following lines to enable the exceptions:
-#
-# for line in open('nitpick-exceptions'):
-#     if line.strip() == "" or line.startswith("#"):
-#         continue
-#     dtype, target = line.split(None, 1)
-#     target = target.strip()
-#     nitpick_ignore.append((dtype, six.u(target)))