pmotools-app

This repository contains the code for an app built with Streamlit that helps users convert their data into the PMO format using the pmotools-python package.

Contents

• Features
• Requirements
• Usage
• Developer Notes

Features

• Convert your data to PMO (in development)
  • Upload your data files (CSV, TXT, or XLSX)
  • Converts the data into PMO format using pmotools
  • Download the converted data as PMO

Requirements

• Python 3.x
• Streamlit
• pmotools
• numpy
• fuzzywuzzy

Usage

Note : This won't work for now as pmotools-python is not pip installable yet. See Dev Notes for current set up

1. Clone the repository:

   git clone https://github.com/yourusername/streamlit-pmo-converter.git
   cd streamlit-pmo-converter

2. Install the dependencies

   pip install -r requirements.txt

3. Launch the app with

   streamlit run PMO_Builder.py

Developer Notes

1. Clone the repository:

   git clone https://github.com/yourusername/streamlit-pmo-converter.git
   cd streamlit-pmo-converter

2. Install the dependencies

   pip install -r requirements.txt

3. Clone the pmotools-python repository and install

   git clone [email protected]:PlasmoGenEpi/pmotools-python.git 
   cd pmotools-python 
   git checkout develop 
   pip install -e .
   cd ..

4. Launch the app with

   streamlit run PMO_Builder.py