renamed the tests for creating the inputs

Reed-CompBio · Oct 4, 2023 · 32be496 · 32be496
1 parent b314751
commit 32be496
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Showing 9 changed files with 4 additions and 4 deletions.
diff --git a/docker-wrappers/Cytoscape/cytoscape_util.py b/docker-wrappers/Cytoscape/cytoscape_util.py
@@ -115,7 +115,7 @@ def load_pathways(pathways: List[str], output: str) -> None:
         path, name = parse_name(pathway)
         suid = p4c.networks.import_network_from_tabular_file(
             file=path,
-            column_type_list='s,t,x',
+            column_type_list='s,t,x,ea',
             delimiters='\t'
         )
         p4c.networks.rename_network(name, network=suid)

diff --git a/...ts/expected/allpairs-network-expected.txt → ...ts/expected/allpairs-network-expected.txt b/...ts/expected/allpairs-network-expected.txt → ...ts/expected/allpairs-network-expected.txt
diff --git a/...puts/expected/domino-network-expected.txt → ...puts/expected/domino-network-expected.txt b/...puts/expected/domino-network-expected.txt → ...puts/expected/domino-network-expected.txt
diff --git a/...areInputs/expected/meo-edges-expected.txt → ...ateInputs/expected/meo-edges-expected.txt b/...areInputs/expected/meo-edges-expected.txt → ...ateInputs/expected/meo-edges-expected.txt
diff --git a/...s/expected/mincostflow-edges-expected.txt → ...s/expected/mincostflow-edges-expected.txt b/...s/expected/mincostflow-edges-expected.txt → ...s/expected/mincostflow-edges-expected.txt
diff --git a/...ected/omicsintegrator1-edges-expected.txt → ...ected/omicsintegrator1-edges-expected.txt b/...ected/omicsintegrator1-edges-expected.txt → ...ected/omicsintegrator1-edges-expected.txt
diff --git a/...ected/omicsintegrator2-edges-expected.txt → ...ected/omicsintegrator2-edges-expected.txt b/...ected/omicsintegrator2-edges-expected.txt → ...ected/omicsintegrator2-edges-expected.txt
diff --git a/.../expected/pathlinker-network-expected.txt → .../expected/pathlinker-network-expected.txt b/.../expected/pathlinker-network-expected.txt → .../expected/pathlinker-network-expected.txt
diff --git a/test/PrepareInputs/test_prepare_inputs.py → test/GenerateInputs/test_generate_inputs.py b/test/PrepareInputs/test_prepare_inputs.py → test/GenerateInputs/test_generate_inputs.py
@@ -7,12 +7,12 @@
 
 from src import runner
 
-OUTDIR = "test/PrepareInputs/output/"
-EXPDIR = "test/PrepareInputs/expected/"
+OUTDIR = "test/GenerateInputs/output/"
+EXPDIR = "test/GenerateInputs/expected/"
 algorithms = ['mincostflow', 'meo', 'omicsintegrator1', "omicsintegrator2", "domino", "pathlinker", "allpairs"]
 algo_exp_file = {'mincostflow': 'edges', 'meo': 'edges', 'omicsintegrator1': 'edges', 'omicsintegrator2': 'edges', 'domino': 'network', 'pathlinker': 'network', "allpairs": 'network'}
 
-class TestPrepareInputs:
+class TestGenerateInputs:
     def setup_class(cls):
         """
         Create the expected output directory