Skip to content

Pull requests: Reed-CompBio/spras

New pull request New
42 Open 156 Closed
42 Open 156 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

ci: artifact test durations infrastructure misc. changes made to SPRAS itself
#402 opened Sep 25, 2025 by tristan-f-r Loading…
ci: label merge conflicts infrastructure misc. changes made to SPRAS itself
#401 opened Sep 24, 2025 by tristan-f-r Loading…
docs(htcondor): mv documentation Improvements or additions to documentation
#400 opened Sep 24, 2025 by tristan-f-r Loading…
1
docs(rtd): update fordevs documentation Improvements or additions to documentation easy PRs which take at most a minute to review with little thinking.
#399 opened Sep 24, 2025 by tristan-f-r Loading…
1
refactor: add MissingDataError P-medium medium prirotity; this is needed for some external service or another PR refactor Changes that don't actually improve anything except for code quality.
#394 opened Sep 20, 2025 by tristan-f-r Loading…
1
1
test: mv algorithm tests to subfolder awaiting-author Author of the PR needs to fix something from a review / etc. easy PRs which take at most a minute to review with little thinking. infrastructure misc. changes made to SPRAS itself refactor Changes that don't actually improve anything except for code quality.
#391 opened Sep 6, 2025 by tristan-f-r • Draft
refactor: broaden container settings args blocked-by-other-pr P-medium medium prirotity; this is needed for some external service or another PR refactor Changes that don't actually improve anything except for code quality.
#390 opened Sep 6, 2025 by tristan-f-r Loading…
1 task
1
refactor!: move container options to shared containers key infrastructure misc. changes made to SPRAS itself P-medium medium prirotity; this is needed for some external service or another PR
#387 opened Aug 31, 2025 by tristan-f-r Loading…
1
11
chore: pixi infrastructure misc. changes made to SPRAS itself
#382 opened Aug 28, 2025 by tristan-f-r Loading…
1
fix: never parse index_col from node data blocked-by-other-pr bug Something isn't working easy PRs which take at most a minute to review with little thinking.
#379 opened Aug 21, 2025 by tristan-f-r Loading…
1 task
1
feat: add input nodes as evaluation baseline analysis Analysis of PRA outputs needed for benchmarking Priority PRs needed for the benchmarking paper
#372 opened Aug 14, 2025 by ntalluri Loading…
28
docs: tutorials for COMBINE25 documentation Improvements or additions to documentation
#369 opened Aug 12, 2025 by ntalluri Loading…
47
ci: windows awaiting-author Author of the PR needs to fix something from a review / etc. blocked-by-other-pr infrastructure misc. changes made to SPRAS itself
#364 opened Jul 29, 2025 by tristan-f-r • Draft
1 of 3 tasks
3
fix: make dataset nodes ordering stable infrastructure misc. changes made to SPRAS itself needed for benchmarking Priority PRs needed for the benchmarking paper
#363 opened Jul 29, 2025 by tristan-f-r Loading…
1
2
feat: json schema enhancement New feature or request
#358 opened Jul 28, 2025 by tristan-f-r Loading…
1 task done
1
feat: algorithm attributions enhancement New feature or request
#345 opened Jul 22, 2025 by tristan-f-r Loading…
1
1
chore: bump btb enhancement New feature or request
#344 opened Jul 21, 2025 by tristan-f-r Loading…
1
fix(rwr): add max_iters bug Something isn't working
#342 opened Jul 21, 2025 by tristan-f-r Loading…
1
feat: seeds awaiting-author Author of the PR needs to fix something from a review / etc. enhancement New feature or request needed for benchmarking Priority PRs needed for the benchmarking paper
#335 opened Jul 17, 2025 by tristan-f-r • Draft
2 tasks
2
feat: MuST algorithm Pathway reconstruction algorithm to add to SPRAS
#333 opened Jul 16, 2025 by tristan-f-r Loading…
1
1
feat: cli enhancement New feature or request P-medium medium prirotity; this is needed for some external service or another PR
#332 opened Jul 15, 2025 by tristan-f-r Loading…
5
feat!: typed PRA#run blocked-by-other-pr enhancement New feature or request needed for benchmarking Priority PRs needed for the benchmarking paper P-medium medium prirotity; this is needed for some external service or another PR
#329 opened Jul 14, 2025 by tristan-f-r Loading…
4 of 7 tasks
3
6
refactor(runner): rename prepare -> generate_inputs easy PRs which take at most a minute to review with little thinking. refactor Changes that don't actually improve anything except for code quality.
#327 opened Jul 11, 2025 by tristan-f-r Loading…
1
2
test: dataset infrastructure misc. changes made to SPRAS itself
#326 opened Jul 11, 2025 by tristan-f-r Loading…
1
feat: visjs analysis Analysis of PRA outputs enhancement New feature or request P-medium medium prirotity; this is needed for some external service or another PR
#325 opened Jul 11, 2025 by tristan-f-r Loading…
1
ProTip! Add no:assignee to see everything that’s not assigned.