updated all config files

Reed-CompBio · Nov 15, 2024 · 3507475 · 3507475
1 parent f1f58e7
commit 3507475
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Showing 2 changed files with 6 additions and 2 deletions.
diff --git a/config/config.yaml b/config/config.yaml
@@ -177,4 +177,8 @@ analysis:
         include: true
         # adds evaluation per algorithm per dataset-goldstandard pair
         aggregate_per_algorithm: true
-
+        # TODO: should we decouple parts of eval that involve ml
+        # it will be good to seperate them otherwise if ml doesn't work then eval won't work at all
+          # pca_chosen
+          # ensemble
+          # precisin and recall
diff --git a/config/egfr-param-tuning.yaml b/config/egfr-param-tuning.yaml
@@ -3439,7 +3439,7 @@ gold_standards:
       - tps_egfr
 reconstruction_settings:
   locations:
-    reconstruction_dir: output
+    reconstruction_dir: output/tps_egfr
   run: true
 analysis:
   summary: