Evaluation Implementation

[ntalluri]

No description provided.

[agitter]

A few initial thoughts.

[ntalluri]

The first pass works for running all datasets over all gold standard data. Next pass will allow for a user to set which datasets to run over gold standard

[ntalluri]

I need to make a third pass at the code to allow for evaluation code to truly be optional

[agitter]

I'm leaving a few initial comments but skipped evaluation.py for now. I'm still looking for the best source of EGFR evaluation data we can use for a test case on pathways created with the egfr.yml config file.

[ntalluri]

Ready for review

[agitter]

Initially I was going to have an EGFR-based test case be part of this initial pull request. Now, I think we should work to merge it soon and add that test case in a follow up pull request to test the actual precision calcuation.

[agitter]

I pushed a couple final changes. This is ready to merge once the tests pass.