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summarize_networks InvalidIndexError #191

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summarize_networks InvalidIndexError #191

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849ebc4
add repeat edge in pathway.txt test
ntalluri Oct 25, 2024
f55855a
fix InvalidIndexError
ntalluri Oct 25, 2024
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5 changes: 5 additions & 0 deletions test/ml/input/test-repeat-edges/repeat.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
Node1 Node2 Rank Direction
A B 1 U
C D 1 U
E F 1 U
A B 1 U
3 changes: 3 additions & 0 deletions test/ml/test_ml.py
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Expand Up @@ -42,6 +42,9 @@ def test_summarize_networks_wrong_direction(self):
with pytest.raises(ValueError):
ml.summarize_networks([INPUT_DIR + 'test-data-wrong-direction/wrong-direction.txt'])

def test_repeat_edges(self):
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ml.summarize_networks([INPUT_DIR + 'test-data-s1/s1.txt', INPUT_DIR + 'test-repeat-edges/repeat.txt'])

def test_empty(self):
dataframe = ml.summarize_networks([INPUT_DIR + 'test-data-empty/empty.txt'])
with pytest.raises(ValueError): # raises error if empty dataframe is used for post processing
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