-
Notifications
You must be signed in to change notification settings - Fork 5
Home
This wiki provides the usage instructions for BakingTray, a ScanImage wrapper that performs serial section 2-photon tomography (STP) within MATLAB. The following is an example image obtained with the software. The image is obtained using tile-scanning with a 12 kHz resonant scanner. Tile illumination artifacts have been removed during image assembly by StitchIt.
Contributions are welcome. Please read the developer notes and code organization pages.
Installation: Getting Started
Hardware requirements
Setting up: Overview
Verifying hardware operation
Starting BakingTray
Setting up ScanImage
Settings Files
Achieving high stitching accuracy
Installation: Calibration
Basic calibrating procedures
Calibrating the stages
Fine-tuning positioning accuracy
Further User Instructions
FAQ
Problems & Solutions