Skip to content
@Teichlab

Teichmann Group

Sarah Teichmann's group at EMBL-EBI / Wellcome Trust Sanger Institute

Pinned Loading

  1. scg_lib_structs scg_lib_structs Public

    Collections of library structure and sequence of popular single cell genomic methods

    HTML 400 86

  2. cellphonedb cellphonedb Public archive

    Python 338 105

  3. bbknn bbknn Public

    Batch balanced KNN

    Python 138 23

  4. MultiMAP MultiMAP Public

    MultiMAP for integration of single cell multi-omics

    Python 51 11

  5. embl-single-cell-course-2016 embl-single-cell-course-2016 Public

    Material for lecture at the EMBL Single Cell Course 2016

    Jupyter Notebook 46 16

Repositories

Showing 10 of 64 repositories
  • bin2cell Public

    Join subcellular Visium HD bins into cells

    Teichlab/bin2cell’s past year of commit activity
    Jupyter Notebook 20 MIT 0 0 0 Updated Jul 4, 2024
  • thymus_spatial_atlas Public

    general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!

    Teichlab/thymus_spatial_atlas’s past year of commit activity
    Jupyter Notebook 4 0 0 0 Updated Jul 2, 2024
  • GeneDistFinder Public

    Alignment tests for reference and query single cell datasets

    Teichlab/GeneDistFinder’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jul 1, 2024
  • celltypist_wiki Public

    Materials and scripts for building cell type encyclopedia table

    Teichlab/celltypist_wiki’s past year of commit activity
    Python 13 2 0 0 Updated Jun 24, 2024
  • cell2tcr Public

    Inference of TCR motifs

    Teichlab/cell2tcr’s past year of commit activity
    Jupyter Notebook 25 3 3 0 Updated Jun 24, 2024
  • COVID-19_Challenge_Study Public
    Teichlab/COVID-19_Challenge_Study’s past year of commit activity
    HTML 3 MIT 0 1 0 Updated Jun 24, 2024
  • scg_lib_structs Public

    Collections of library structure and sequence of popular single cell genomic methods

    Teichlab/scg_lib_structs’s past year of commit activity
    HTML 400 86 1 0 Updated Jun 19, 2024
  • PanGIAtlas Public

    Integration of gut cell atlases

    Teichlab/PanGIAtlas’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jun 7, 2024
  • celltypist Public

    A tool for semi-automatic cell type classification

    Teichlab/celltypist’s past year of commit activity
    Python 257 MIT 40 14 1 Updated Jun 6, 2024
  • gene2probe Public

    Pipeline for designing custom probes against human genes

    Teichlab/gene2probe’s past year of commit activity
    Jupyter Notebook 6 MIT 1 0 0 Updated Jun 3, 2024
View all repositories

Most used topics

Loading…