Add filterScore and sjdOverhangMin parameters #136
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@PhilPalmer I'm testing this now, but it looks like it is working. Can you check and make sure I did it correctly? Also can you edit the log section of |
PhilPalmer
approved these changes
Jun 26, 2020
| @@ -20,43 +20,87 @@ def helpMessage() { | |||
| The typical command for running the pipeline is as follows: | |||
| nextflow run main.nf --reads my_reads.csv --gtf genome.gtf --star_index star_dir -profile base,sumner | |||
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| Input files: | |||
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Ah, nice idea to change the sections of input parameters in the help message & config. I much prefer your new organisation. I think it makes a lot more sense, especially as new input parameters are added for the specific tools eg STAR/trimmomatic etc.
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addresses issue here