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@UCSC-Treehouse

UCSC Treehouse Childhood Cancer Initiative

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  1. mend_qc mend_qc Public

    Count Mapped Exonic Non-Duplicate (MEND) reads in an RNA Seq bam file

    R 4

  2. pipelines pipelines Public

    Makefiles to run dockerized pipelines used in Treehouse on a single sample

    Makefile 3 6

  3. b2f_docker b2f_docker Public

    C++ 2

  4. CARE CARE Public

    Treehouse Comparative Analysis of RNA Expression

    Jupyter Notebook 2

  5. fusion-for-core fusion-for-core Public

    UCSC Treehouse Gene Fusion Analysis Pipeline

    Python 1 9

  6. hub hub Public

    Tooling to spin up and manage jupyter, nbviewer, xena for tertiary analyis

    Python 1 1

Repositories

Showing 10 of 47 repositories
  • mend_qc Public

    Count Mapped Exonic Non-Duplicate (MEND) reads in an RNA Seq bam file

    UCSC-Treehouse/mend_qc’s past year of commit activity
    R 4 MIT 0 1 1 Updated Dec 13, 2024
  • brca-exchange Public Forked from BRCAChallenge/brca-exchange

    Overall management and deployment of the BRCA Exchange web portal and pipeline scripts

    UCSC-Treehouse/brca-exchange’s past year of commit activity
    Python 0 32 0 0 Updated Sep 16, 2024
  • compendium-expression-matrix Public
    UCSC-Treehouse/compendium-expression-matrix’s past year of commit activity
    Python 0 0 0 0 Updated Jul 17, 2024
  • ccdi-federation-api Public
    UCSC-Treehouse/ccdi-federation-api’s past year of commit activity
    0 0 0 0 Updated May 17, 2024
  • TUBI-Manuscript-1 Public
    UCSC-Treehouse/TUBI-Manuscript-1’s past year of commit activity
    HTML 0 CC-BY-4.0 0 0 0 Updated Oct 13, 2023
  • TUBI-Manuscript Public
    UCSC-Treehouse/TUBI-Manuscript’s past year of commit activity
    0 0 0 0 Updated Oct 5, 2023
  • hbtest_OpenPBTA-manuscript Public Forked from AlexsLemonade/OpenPBTA-manuscript

    The manuscript repository for the Open Pediatric Brain Tumor Atlas Project

    UCSC-Treehouse/hbtest_OpenPBTA-manuscript’s past year of commit activity
    HTML 0 26 0 0 Updated Aug 30, 2023
  • TUBI-2023 Public
    UCSC-Treehouse/TUBI-2023’s past year of commit activity
    HTML 0 CC0-1.0 0 0 0 Updated Aug 30, 2023
  • hexmap-data Public Forked from Stuartlab-UCSC/hexmap-data

    compute server for hexmap

    UCSC-Treehouse/hexmap-data’s past year of commit activity
    Python 0 1 0 0 Updated Aug 17, 2023
  • hexmap-view Public Forked from Stuartlab-UCSC/hexmap-view
    UCSC-Treehouse/hexmap-view’s past year of commit activity
    JavaScript 0 MIT 3 0 0 Updated Aug 17, 2023
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