Merge pull request #72 from UMCUGenetics/release/v0.7.1

Release/v0.7.1
UMCUGenetics · Jun 9, 2023 · 7bf677e · 7bf677e
2 parents 64ea49a + fcd72d7
commit 7bf677e
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Showing 5 changed files with 5 additions and 6 deletions.
diff --git a/BWA-Mapping/bwa-0.7.17_samtools-1.9/Mapping.nf b/BWA-Mapping/bwa-0.7.17_samtools-1.9/Mapping.nf
@@ -2,7 +2,7 @@ process BWAMapping {
     tag {"BWA Mem ${sample_id} - ${rg_id}"}
     label 'BWA_0_7_17'
     label 'BWA_0_7_17_Mem'
-    container = 'library://sawibo/default/bioinf-tools:bwa-0.7.17_samtools-1.9'
+    container = 'library://library.sylabs.io/sawibo/default/bioinf-tools:bwa-0.7.17_samtools-1.9'
     shell = ['/bin/bash', '-euo', 'pipefail']
 
     input:

diff --git a/ControlFREEC/11.5/AssessSignificance.nf b/ControlFREEC/11.5/AssessSignificance.nf
@@ -2,7 +2,7 @@ process AssessSignificance {
     tag {"Control Freec AssessSignificance ${sample_id}"}
     label 'ControlFreec_11_5'
     label 'ControlFreec_11_5_AssessSignificance'
-    container = 'library://sawibo/default/bioinf-tools:freec11.5'
+    container = 'library://library.sylabs.io/sawibo/default/bioinf-tools:freec11.5'
     shell = ['/bin/bash', '-euo', 'pipefail']
 
     input:

diff --git a/ControlFREEC/11.5/Freec.nf b/ControlFREEC/11.5/Freec.nf
@@ -2,8 +2,7 @@ process Freec {
     tag {"Control Freec ${sample_id}"}
     label 'ControlFreec_11_5'
     label 'ControlFreec_11_5_Freec'
-    //TODO: upload to singularity library
-    container = 'library://sawibo/default/bioinf-tools:freec11.5'
+    container = 'library://library.sylabs.io/sawibo/default/bioinf-tools:freec11.5'
     shell = ['/bin/bash', '-euo', 'pipefail']
 
     input:

diff --git a/ControlFREEC/11.5/MakeGraph.nf b/ControlFREEC/11.5/MakeGraph.nf
@@ -2,7 +2,7 @@ process MakeGraph {
     tag {"Control Freec MakeGraph ${sample_id}"}
     label 'ControlFreec_11_5'
     label 'ControlFreec_11_5_MakeGraph'
-    container = 'library://sawibo/default/bioinf-tools:freec11.5'
+    container = 'library://library.sylabs.io/sawibo/default/bioinf-tools:freec11.5'
     shell = ['/bin/bash', '-euo', 'pipefail']
 
     input:

diff --git a/ControlFREEC/11.5/MakeKaryotype.nf b/ControlFREEC/11.5/MakeKaryotype.nf
@@ -2,7 +2,7 @@ process MakeKaryotype {
     tag {"Control Freec MakeKaryotype ${sample_id}"}
     label 'ControlFreec_11_5'
     label 'ControlFreec_11_5_MakeKaryotype'
-    container = 'library://sawibo/default/bioinf-tools:freec11.5'
+    container = 'library://library.sylabs.io/sawibo/default/bioinf-tools:freec11.5'
     shell = ['/bin/bash', '-euo', 'pipefail']
 
     input: