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@rernst rernst released this 10 Jul 08:11
· 155 commits to master since this release
v0.2.0
3890843
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Learn about vigilant mode.

DOI

  • Refactor code layout / style
  • New modules
    • ControlFREEC 11.5
    • GATK 3.8.1 - BaseRecalibrator, CatVariantsGVCF, CombineVariantsGVCF, GenotypeGVCFs, HaplotypeCallerGVCF
    • Manta 1.6.0
    • MultiQC 1.9
    • Picard 2.22.0 - CollectWgsMetrics
    • STARFusion 1.8.1
    • Sambamba 0.7.0 - Index
    • UCSC 377 - GenePredToBed
    • Utils - MergeFastqLanes
  • Renamed modules
    • Preseq/2.0.3/Lc_extrap.nf -> Preseq/2.0.3/LCExtrap.nf
    • Utils/mergeFastqLanes.nf -> Utils/MergeFastqLanes.nf
    • ucsc/377/genePredToBed/GenePredToBed.nf -> UCSC/377/GenePredToBed.nf
    • ucsc/377/gtfToGenePred/GtfToGenePred.nf -> UCSC/377/GtfToGenePred.nf
  • Removed modules
    • STAR-Fusion 1.8.1
    • STAR 2.6.0c
    • fgbio 1.1.0 DemuxFastqs.nf
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