v0.2.0

• Refactor code layout / style
• New modules
  • ControlFREEC 11.5
  • GATK 3.8.1 - BaseRecalibrator, CatVariantsGVCF, CombineVariantsGVCF, GenotypeGVCFs, HaplotypeCallerGVCF
  • Manta 1.6.0
  • MultiQC 1.9
  • Picard 2.22.0 - CollectWgsMetrics
  • STARFusion 1.8.1
  • Sambamba 0.7.0 - Index
  • UCSC 377 - GenePredToBed
  • Utils - MergeFastqLanes
• Renamed modules
  • Preseq/2.0.3/Lc_extrap.nf -> Preseq/2.0.3/LCExtrap.nf
  • Utils/mergeFastqLanes.nf -> Utils/MergeFastqLanes.nf
  • ucsc/377/genePredToBed/GenePredToBed.nf -> UCSC/377/GenePredToBed.nf
  • ucsc/377/gtfToGenePred/GtfToGenePred.nf -> UCSC/377/GtfToGenePred.nf
• Removed modules
  • STAR-Fusion 1.8.1
  • STAR 2.6.0c
  • fgbio 1.1.0 DemuxFastqs.nf

v0.1.0

Initial release, tested with Nextflow 20.04.1