Add seed to leiden clustering #267

	name: Test (Linux, CUDA)

	on:
	pull_request:
	branches: [main]
	types: [labeled, synchronize, opened]
	schedule:
	- cron: "0 10 * * *" # runs at 10:00 UTC (03:00 PST) every day
	workflow_dispatch:

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	test:
	# if PR has label "cuda tests" or "all tests" or if scheduled or manually triggered
	if: >-
	(
	contains(github.event.pull_request.labels.*.name, 'cuda tests') \|\|
	contains(github.event.pull_request.labels.*.name, 'all tests') \|\|
	contains(github.event_name, 'schedule') \|\|
	contains(github.event_name, 'workflow_dispatch')
	)
	runs-on: [self-hosted, Linux, X64, CUDA]
	defaults:
	run:
	shell: bash -e {0} # -e to fail on error

	strategy:
	fail-fast: false
	matrix:
	python: ["3.11"]
	cuda: ["11"]

	container:
	image: scverse/scvi-tools:py${{ matrix.python }}-cu${{ matrix.cuda }}-base
	options: --user root --gpus all

	name: Integration (CUDA)

	env:
	OS: ${{ matrix.os }}
	PYTHON: ${{ matrix.python }}

	steps:
	- uses: actions/checkout@v4

	- name: Install dependencies
	run: \|
	pip install ".[dev,test]"

	- name: Test
	env:
	MPLBACKEND: agg
	PLATFORM: ${{ matrix.os }}
	DISPLAY: :42
	run: \|
	coverage run -m pytest -v --color=yes
	- name: Report coverage
	run: \|
	coverage report
	- name: Upload coverage
	uses: codecov/codecov-action@v4
	with:
	token: ${{ secrets.CODECOV_TOKEN }}

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