fixed failing windows miniconda setup #1118
Workflow file for this run
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| # This workflow will install Python dependencies and run tests on | |
| # Windows and Linux systems with a variety of Python versions | |
| # For more information see: | |
| # https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: tests | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| schedule: # only upstream, won't trigger on forks! | |
| - cron: '0 0 * * *' # daily | |
| jobs: | |
| linux-tests: | |
| name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10'] | |
| os: ['ubuntu-latest'] | |
| ymlfile: ['environment.yml'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: 'latest' | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ${{ matrix.ymlfile }} | |
| mamba-version: '*' | |
| activate-environment: qa4sm_reader # todo: must match with name in environment.yml | |
| auto-activate-base: false | |
| - name: Print environment infos | |
| shell: bash -l {0} | |
| run: | | |
| conda info -a | |
| conda list | |
| pip list | |
| which pip | |
| which python | |
| - name: Export Environment | |
| shell: bash -l {0} | |
| run: | | |
| mkdir -p artifacts | |
| filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml | |
| conda env export --no-builds | grep -v "prefix" > artifacts/$filename | |
| - name: Upload Artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} | |
| path: artifacts/* | |
| - name: Install package and test | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e . | |
| pytest | |
| - name: Upload Coverage | |
| shell: bash -l {0} | |
| run: | | |
| pip install coveralls && coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
| COVERALLS_PARALLEL: true | |
| windows-tests: | |
| name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ['3.10'] | |
| os: ['windows-latest'] | |
| ymlfile: ['environment.yml'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: 'latest' | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ${{ matrix.ymlfile }} | |
| activate-environment: qa4sm_reader # todo: must match with name in environment.yml | |
| auto-activate-base: false | |
| - name: Print environment infos | |
| shell: cmd | |
| run: | | |
| conda info -a | |
| conda list | |
| pip list | |
| where pip | |
| where python | |
| - name: Export Environment | |
| shell: cmd | |
| run: | | |
| mkdir artifacts | |
| set filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml | |
| conda env export --no-builds | findstr /v "prefix" > artifacts/%filename% | |
| - name: Upload Artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} | |
| path: artifacts/* | |
| - name: Install package and test | |
| shell: cmd | |
| run: | | |
| conda activate qa4sm_reader | |
| pip install -e . | |
| pytest | |
| - name: Upload Coverage | |
| shell: cmd | |
| run: | | |
| pip install coveralls && coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
| COVERALLS_PARALLEL: true | |
| coveralls: | |
| name: Submit Coveralls 👚 | |
| needs: [linux-tests, windows-tests] | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Finished | |
| run: | | |
| pip3 install --upgrade coveralls && coveralls --service=github --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |