fixed failing windows miniconda setup #1131
Workflow file for this run
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# This workflow will install Python dependencies and run tests on | |
# Windows and Linux systems with a variety of Python versions | |
# For more information see: | |
# https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: tests | |
on: | |
push: | |
pull_request: | |
workflow_dispatch: | |
schedule: # only upstream, won't trigger on forks! | |
- cron: '0 0 * * *' # daily | |
jobs: | |
build: | |
name: Build py${{ matrix.python-version }} @ ${{ matrix.os }} 🐍 | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
python-version: ['3.8', '3.9', '3.10'] | |
os: ['ubuntu-latest'] | |
ymlfile: ['environment.yml'] | |
include: | |
- os: 'windows-latest' | |
python-version: '3.10' | |
ymlfile: 'environment.yml' | |
steps: | |
- uses: actions/checkout@v2 | |
with: | |
submodules: true | |
- uses: mamba-org/setup-micromamba@v1 | |
with: | |
micromamba-version: 'latest' | |
environment-file: ${{ matrix.ymlfile }} | |
micromamba-root-path: ~/micromamba | |
- name: Initialize micromamba environment (Linux) | |
if: runner.os == 'Linux' | |
shell: bash -l {0} | |
run: | | |
micromamba shell init -s bash -p ~/micromamba/envs/qa4sm_reader | |
micromamba create -y --name qa4sm_reader --file ${{ matrix.ymlfile }} | |
echo "source ~/micromamba/etc/profile.d/micromamba.sh" >> ~/.bashrc | |
- name: Initialize micromamba environment (Windows) | |
if: runner.os == 'Windows' | |
shell: cmd | |
run: | | |
micromamba shell init -s cmd -p %USERPROFILE%\micromamba\envs\qa4sm_reader | |
micromamba create -y --name qa4sm_reader --file %USERPROFILE%\micromamba\envs\qa4sm_reader\${{ matrix.ymlfile }} | |
- name: Activate environment (Linux) | |
if: runner.os == 'Linux' | |
shell: bash -l {0} | |
run: | | |
source ~/micromamba/etc/profile.d/micromamba.sh | |
micromamba activate qa4sm_reader | |
- name: Activate environment (Windows) | |
if: runner.os == 'Windows' | |
shell: cmd | |
run: | | |
call %USERPROFILE%\micromamba\etc\profile.d\micromamba.cmd | |
micromamba activate qa4sm_reader | |
- name: Print environment infos (Linux) | |
if: runner.os == 'Linux' | |
shell: bash -l {0} | |
run: | | |
micromamba info | |
micromamba list | |
pip list | |
which pip | |
which python | |
- name: Print environment infos (Windows) | |
if: runner.os == 'Windows' | |
shell: cmd | |
run: | | |
micromamba info | |
micromamba list | |
pip list | |
where pip | |
where python | |
- name: Export Environment (Linux) | |
if: runner.os == 'Linux' | |
shell: bash -l {0} | |
run: | | |
mkdir -p artifacts | |
filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml | |
micromamba env export --name qa4sm_reader > artifacts/$filename | |
- name: Export Environment (Windows) | |
if: runner.os == 'Windows' | |
shell: cmd | |
run: | | |
mkdir artifacts | |
set filename=env_py${{ matrix.python-version }}_${{ matrix.os }}.yml | |
micromamba env export --name qa4sm_reader > artifacts\%filename% | |
- name: Upload Artifacts | |
uses: actions/upload-artifact@v4 | |
with: | |
name: Artifacts-py${{ matrix.python-version }}-${{ matrix.os }} | |
path: artifacts/* | |
- name: Install package and test (Linux) | |
if: runner.os == 'Linux' | |
shell: bash -l {0} | |
run: | | |
pip install -e . | |
pytest | |
- name: Install package and test (Windows) | |
if: runner.os == 'Windows' | |
shell: cmd | |
run: | | |
pip install -e . | |
pytest | |
- name: Upload Coverage (Linux) | |
if: runner.os == 'Linux' | |
shell: bash -l {0} | |
run: | | |
pip install coveralls && coveralls --service=github | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
COVERALLS_PARALLEL: true | |
- name: Upload Coverage (Windows) | |
if: runner.os == 'Windows' | |
shell: cmd | |
run: | | |
pip install coveralls && coveralls --service=github | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
COVERALLS_PARALLEL: true | |
coveralls: | |
name: Submit Coveralls 👚 | |
needs: build | |
runs-on: ubuntu-latest | |
container: python:3-slim | |
steps: | |
- name: Finished | |
run: | | |
pip3 install --upgrade coveralls && coveralls --service=github --finish | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |