v.2.0.0

• McClintock completely re-written into a snakemake-based pipeline
• Expanded the available TE detection methods
• Expanded the output files to include VCF, and HTML summary report

v1.0.0

• Minor bug fixes in installation and coverage coordinate system
• Last version of original McClintock system described in Nelson et al (2017)

v0.2

• Add coverage module to calculate and plot depth of coverage for all TE families.
• Use conda for environment dependencies.

v0.1

One last PoPoolationTE fix