feat: Implement gene search functionality and gene information page (#11)

.gitattributes

@@ -0,0 +1 @@
+**/__tests__/*.json filter=lfs diff=lfs merge=lfs -text

.github/workflows/main.yml

@@ -48,6 +48,8 @@ jobs:
     steps:
       - name: Checkout repository
         uses: actions/checkout@v3
+        with:
+            lfs: 'true'
 
       - name: Set up Python 3.10
         uses: actions/setup-python@v4
@@ -106,6 +108,8 @@ jobs:
     steps:
       - name: Checkout repository
         uses: actions/checkout@v3
+        with:
+            lfs: 'true'
 
       - name: Set up node 20.x
         uses: actions/setup-node@v3

backend/app/main.py

@@ -52,12 +52,16 @@ async def reverse_proxy(request: Request) -> Response:
     backend_url = None
 
     if url.path.startswith("/proxy/annonars"):
-        backend_url = BACKEND_PREFIX_ANNONARS + url.path.replace("/proxy/annonars", "/annos")
+        backend_url = BACKEND_PREFIX_ANNONARS + url.path.replace("/proxy/annonars", "")
     elif url.path.startswith("/proxy/mehari"):
         backend_url = BACKEND_PREFIX_MEHARI + url.path.replace("/proxy/mehari", "")
     elif url.path.startswith("/proxy/viguno"):
         backend_url = BACKEND_PREFIX_VIGUNO + url.path.replace("/proxy/viguno", "")
 
+    import sys
+
+    print(f"backend_url = {backend_url}", file=sys.stderr)
+
     if backend_url:
         backend_url = backend_url + (f"?{url.query}" if url.query else "")
         backend_req = client.build_request(
@@ -82,6 +86,14 @@ async def reverse_proxy(request: Request) -> Response:
 
 
 # Routes
+@app.get("/api/search")
+async def search_gene(
+    geneSymbol: str = Query(...), spdi: str = Query(""), genomeRelease: str = Query("hg19")
+):
+    gene_details = {"geneSymbol": geneSymbol, "genomeRelease": genomeRelease}
+    return JSONResponse(content=gene_details)
+
+
 if SERVE_FRONTEND:  # pragma: no cover
     print(f"SERVE_FRONTEND = {SERVE_FRONTEND}", file=sys.stderr)
     app.mount("/ui", StaticFiles(directory=SERVE_FRONTEND), name="app")

backend/tests/test_main.py

@@ -18,6 +18,7 @@
 @pytest.fixture
 def non_mocked_hosts() -> typing.List[str]:
     """List of hosts that should not be mocked.
+
     We read the host from ``client``.
     """
     return [client._base_url.host]