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Perens stereotaxic mri#370

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PolarBean wants to merge 28 commits intobrainglobe:mainbrainglobe/brainglobe-atlasapi:mainfrom PolarBean:perens_stereotaxic_mriPolarBean/brainglobe-atlasapi:perens_stereotaxic_mriCopy head branch name to clipboard

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Commits on Aug 23, 2024

• add perens mri

  PolarBean

  authored
  a5073e7

• update requirement for perens_mri

  PolarBean

  authored
  426e033

• remove hardcoded path

  PolarBean

  authored
  5866489

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 7f1d9eb
  pre-commit-ci[bot]

  committed
  7f1d9eb

• fix formatting to pass checks

  PolarBean

  authored
  d479291

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 2128e25
  pre-commit-ci[bot]

  committed
  2128e25

• fix linting issue

  PolarBean

  authored
  d8215ed

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 5c5f886
  pre-commit-ci[bot]

  committed
  5c5f886

Commits on Aug 27, 2024

• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_stereotaxic_mri_mouse.py

  Show description for af31484
  

  PolarBean

  and

  adamltyson

  authored
  af31484

Commits on Aug 28, 2024

• Merge branch 'brainglobe:main' into perens_stereotaxic_mri

  PolarBean

  authored
  592e255

• Merge branch 'brainglobe:main' into perens_stereotaxic_mri

  PolarBean

  authored
  c284faf

• remove sitk in favour of brainglobe utils

  PolarBean

  authored
  705b4f7

• move download and extraction logic into a seperate function

  PolarBean

  authored
  fac995d

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 71b9f51
  pre-commit-ci[bot]

  committed
  71b9f51

• replace functions that could instead use bg atlas functionality

  PolarBean

  authored
  dff50a7

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for 112a4b9
  pre-commit-ci[bot]

  committed
  112a4b9

Commits on Aug 29, 2024

• Add stereotaxic atlas to readme

  PolarBean

  authored
  f129f23

• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_stereotaxic_mri_mouse.py

  Show description for fead940
  

  PolarBean

  and

  alessandrofelder

  authored
  fead940

• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/perens_stereotaxic_mri_mouse.py

  Show description for 0efb276
  

  PolarBean

  and

  alessandrofelder

  authored
  0efb276

Commits on Sep 11, 2024

• update to follow new template

  PolarBean

  committed
  b05021f

• removed weird nested function

  PolarBean

  committed
  dbe44f1

• change template to reference for consistency

  PolarBean

  authored
  4b8e085

Commits on Sep 12, 2024

• update URL to new version, gubra updated this to fix label issue in lsfm

  PolarBean

  committed
  f568d65

• add progress bar

  PolarBean

  committed
  1fd2290

• add more print statements so progress is easier to observe

  PolarBean

  committed
  178d92e

Commits on Sep 15, 2024

• added correct orientation

  PolarBean

  committed
  239af9a

Commits on Sep 27, 2024

• Merge branch 'brainglobe:main' into perens_stereotaxic_mri

  PolarBean

  authored
  ecc4f40

• added print statement to structure information function

  PolarBean

  authored
  1250a59