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new atlas file added - for cat #403

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new atlas file added - for cat #403

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f3cf15e
new atlas file added - for cat
HenryCrosswell Sep 3, 2024
56cb6f5
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 3, 2024
101bfcb
included relevant metadata - root_id is 999 as labels are a non struc…
HenryCrosswell Sep 8, 2024
206dcde
Merge branch 'catlas' of github.com:HenryCrosswell/brainglobe-atlasap…
HenryCrosswell Sep 8, 2024
c18a8db
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 8, 2024
84e94f6
formatted for black
HenryCrosswell Sep 8, 2024
e99be8f
fixed precommit issues
HenryCrosswell Sep 8, 2024
2a76b3f
Merge branch 'brainglobe:main' into catlas
HenryCrosswell Sep 8, 2024
724531a
modified for precommit
HenryCrosswell Sep 8, 2024
39f0636
Merge branch 'catlas' of github.com:HenryCrosswell/brainglobe-atlasap…
HenryCrosswell Sep 8, 2024
b95d514
loaded raw data instead of url, loaded niftis into template and ref
HenryCrosswell Sep 8, 2024
43307a0
changed reference and template slice index
HenryCrosswell Sep 8, 2024
04173fe
testing csv and text files for discrepancys before proceeding
HenryCrosswell Sep 9, 2024
ebcb38d
changed for pre-commit formatting purposes
HenryCrosswell Sep 18, 2024
f8f74af
changed from structure, r,g,b to rgba, adding another function to acc…
HenryCrosswell Sep 18, 2024
72330bc
edited function to create and add structure id, as well as adding a f…
HenryCrosswell Sep 20, 2024
e4c8df0
changed df into a dicitonary list to work with the helper functions …
HenryCrosswell Sep 28, 2024
b2dbf7d
added the ability to make meshes, however it fails for about 10 ids, …
HenryCrosswell Sep 28, 2024
45a4d6c
created new function to take mesh from vtk files - uses a lot of temp…
HenryCrosswell Sep 28, 2024
9d2ccc0
remove unecessary mesh function
HenryCrosswell Sep 28, 2024
5491243
edited structure id to work with wrapper function, removed unecessary…
HenryCrosswell Sep 29, 2024
1b5f08f
changed download resources to obtain annotations instead of relying o…
HenryCrosswell Oct 2, 2024
9e14c46
hardcoded my csv of fullnames, mostly for testing and help on the cod…
HenryCrosswell Oct 11, 2024
0c0b4a1
downscaled reference image and added a root for the mask, tidied up s…
HenryCrosswell Nov 22, 2024
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