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broadinstitute · Sep 16, 2019 · db06403 · db06403
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diff --git a/example/ABC_output/Neighborhoods/EnhancerList.bed b/example/ABC_output/Neighborhoods/EnhancerList.bed
diff --git a/example/ABC_output/Neighborhoods/EnhancerList.txt b/example/ABC_output/Neighborhoods/EnhancerList.txt
diff --git a/...BC_output/Neighborhoods/Enhancers.DHS.wgEncodeUwDnaseK562AlnRep1.chr22.bam.CountReads.bed b/...BC_output/Neighborhoods/Enhancers.DHS.wgEncodeUwDnaseK562AlnRep1.chr22.bam.CountReads.bed
diff --git a/...BC_output/Neighborhoods/Enhancers.DHS.wgEncodeUwDnaseK562AlnRep2.chr22.bam.CountReads.bed b/...BC_output/Neighborhoods/Enhancers.DHS.wgEncodeUwDnaseK562AlnRep2.chr22.bam.CountReads.bed
diff --git a/example/ABC_output/Neighborhoods/Enhancers.H3K27ac.ENCFF384ZZM.chr22.bam.CountReads.bed b/example/ABC_output/Neighborhoods/Enhancers.H3K27ac.ENCFF384ZZM.chr22.bam.CountReads.bed
diff --git a/example/ABC_output/Neighborhoods/GeneList.TSS1kb.bed b/example/ABC_output/Neighborhoods/GeneList.TSS1kb.bed
diff --git a/example/ABC_output/Neighborhoods/GeneList.bed b/example/ABC_output/Neighborhoods/GeneList.bed
diff --git a/example/ABC_output/Neighborhoods/GeneList.txt b/example/ABC_output/Neighborhoods/GeneList.txt
diff --git a/...le/ABC_output/Neighborhoods/Genes.DHS.wgEncodeUwDnaseK562AlnRep1.chr22.bam.CountReads.bed b/...le/ABC_output/Neighborhoods/Genes.DHS.wgEncodeUwDnaseK562AlnRep1.chr22.bam.CountReads.bed
diff --git a/...le/ABC_output/Neighborhoods/Genes.DHS.wgEncodeUwDnaseK562AlnRep2.chr22.bam.CountReads.bed b/...le/ABC_output/Neighborhoods/Genes.DHS.wgEncodeUwDnaseK562AlnRep2.chr22.bam.CountReads.bed
diff --git a/example/ABC_output/Neighborhoods/Genes.H3K27ac.ENCFF384ZZM.chr22.bam.CountReads.bed b/example/ABC_output/Neighborhoods/Genes.H3K27ac.ENCFF384ZZM.chr22.bam.CountReads.bed
diff --git a/...output/Neighborhoods/Genes.TSS1kb.DHS.wgEncodeUwDnaseK562AlnRep1.chr22.bam.CountReads.bed b/...output/Neighborhoods/Genes.TSS1kb.DHS.wgEncodeUwDnaseK562AlnRep1.chr22.bam.CountReads.bed
diff --git a/...output/Neighborhoods/Genes.TSS1kb.DHS.wgEncodeUwDnaseK562AlnRep2.chr22.bam.CountReads.bed b/...output/Neighborhoods/Genes.TSS1kb.DHS.wgEncodeUwDnaseK562AlnRep2.chr22.bam.CountReads.bed
diff --git a/example/ABC_output/Neighborhoods/Genes.TSS1kb.H3K27ac.ENCFF384ZZM.chr22.bam.CountReads.bed b/example/ABC_output/Neighborhoods/Genes.TSS1kb.H3K27ac.ENCFF384ZZM.chr22.bam.CountReads.bed
diff --git a/example/ABC_output/Peaks/params.txt b/example/ABC_output/Peaks/params.txt
diff --git a/example/ABC_output/Peaks/wgEncodeUwDnaseK562AlnRep1.chr22.macs2_model.r b/example/ABC_output/Peaks/wgEncodeUwDnaseK562AlnRep1.chr22.macs2_model.r
diff --git a/example/ABC_output/Peaks/wgEncodeUwDnaseK562AlnRep1.chr22.macs2_peaks.narrowPeak b/example/ABC_output/Peaks/wgEncodeUwDnaseK562AlnRep1.chr22.macs2_peaks.narrowPeak
diff --git a/example/ABC_output/Peaks/wgEncodeUwDnaseK562AlnRep1.chr22.macs2_peaks.narrowPeak.sorted b/example/ABC_output/Peaks/wgEncodeUwDnaseK562AlnRep1.chr22.macs2_peaks.narrowPeak.sorted