Code

v0.3.2#368

Code

Merged

sjfleming merged 24 commits intomasterbroadinstitute/CellBender:masterfrom devbroadinstitute/CellBender:devCopy head branch name to clipboardJun 24, 2024

+354-43

Commits

Commits on Aug 6, 2023

• Update to v0.3.0 (#237)

  Show description for a3420fd
  sjfleming

  authored
  a3420fd

Commits on Aug 7, 2023

• Add Nature Methods citation and update docs

  sjfleming

  committed
  02dd763

Commits on Aug 28, 2023

• Merge branch 'master' into dev

  sjfleming

  committed
  da9fabb

Commits on Oct 31, 2023

• Add WDL input to set number of retries. (#247)

  kshakir

  authored
  e358888

• Move hash computation so that it is recomputed on retry, and now-invalid checkpoint is not loaded. (#258)

  Show description for 7a834a4
  alecw

  authored
  7a834a4

• Bug fix for WDL using MTX input (#246)

  sjfleming

  authored
  cf71148

• Memory-efficient posterior generation (#263)

  sjfleming

  authored
  322971d

• Fix posterior and estimator integer overflow bugs on Windows (#259)

  sjfleming

  authored
  12b4758

• Move from setup.py to pyproject.toml (#240)

  sjfleming

  authored
  be36006

• Fix bugs with report generation across platforms (#302)

  sjfleming

  authored
  084194b

• Merge branch 'master' into dev

  sjfleming

  committed
  a4da38a

Commits on Apr 11, 2024

• Fix major bug in v0.3.1: negative counts (#347)

  Show description for 97c1d40
  sjfleming

  authored
  97c1d40

Commits on Apr 19, 2024

• Merge branch 'master' into dev

  sjfleming

  committed
  d0cfc36

• Tweak readme appearance

  sjfleming

  committed
  578c214

Commits on Apr 22, 2024

• Add newer Cell Ranger feature types (#339)

  Show description for 80514f0
  jpintar

  authored
  80514f0

• Fix test_elbo bug when retrying with more memory from checkpoint (#345)

  Show description for 72e6a3f
  alecw

  authored
  72e6a3f

Commits on Apr 23, 2024

• Retry: prevent ZeroDivisionError if initial test ELBO is the best test ELBO (#312)

  alecw

  authored
  a71e183

Commits on Jun 21, 2024

• Merge branch 'master' into dev

  sjfleming

  committed
  f3c8865

Commits on Jun 24, 2024

• Azurize CellBender to run on ToA (#367)

  Show description for 2c3dbe8
  aawdeh

  authored
  2c3dbe8

• Updates to benchmarking scripts

  sjfleming

  committed
  569b7b1

• Update documentation in anticipation of v0.3.2

  sjfleming

  committed
  31130fd

• Update wdl for benchmarking compatibility

  sjfleming

  committed
  1198d8f

• Merge branch 'dev' of github.com:broadinstitute/CellBender into dev

  sjfleming

  committed
  87f33e1

• Bump version to v0.3.2

  sjfleming

  committed
  d7d228b