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fix: add sd_locs_vcf_index input to SDtoBAF #644

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fix: add sd_locs_vcf_index input to SDtoBAF #644

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cc1a151
fix: add sd_locs_vcf_index input to SDtoBAF
Feb 12, 2024
20fb698
fix: index as File
Feb 12, 2024
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4 changes: 4 additions & 0 deletions wdl/BatchEvidenceMerging.wdl
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Original file line number Diff line number Diff line change
Expand Up @@ -63,10 +63,13 @@ workflow BatchEvidenceMerging {
}
}
if (!defined(BAF_files)) {
File sd_locs_vcf_index = select_first([sd_locs_vcf]) + ".tbi"

call SDtoBAF {
input:
SD_files = select_first([SD_files]),
sd_locs_vcf = select_first([sd_locs_vcf]),
sd_locs_vcf_index = sd_locs_vcf_index,
batch = batch,
samples = samples,
rename_samples=rename_samples,
Expand Down Expand Up @@ -179,6 +182,7 @@ task SDtoBAF {
input {
Array[File] SD_files
File sd_locs_vcf
File sd_locs_vcf_index
String batch
Array[String] samples
Boolean rename_samples
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