Create tools for SV VCF cleaning #4956

Job	Run time
Validate script WDLs using womtools	46s
Validate generated WDLs using womtools	14m 3s
check if the environment has privileges	1s
build and push gatk docker to artifacts	11m 59s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	25m 31s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	27m 46s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 34s
WDL test RUN_M2_WDL on cromwell	17m 13s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	12m 37s
Java 17.0.6+10 build and test cloud	16m 3s
Java 17.0.6+10 build and test integration	30m 11s
Java 17.0.6+10 build and test unit	18m 33s
Java 17.0.6+10 test on docker integration	34m 22s
Java 17.0.6+10 test on docker unit	20m 13s
Java 17.0.6+10 test on docker variantcalling	27m 1s
Java 17.0.6+10 test on docker conda	25m 13s
	5h 6m 6s

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