Ploidy for Foxtrot VDS [VS-1418] #5018
Triggered via pull request
January 23, 2025 17:34
mcovarr
Status
Failure
Total duration
3h 20m 4s
Artifacts
–
gatk-tests.yml
on: pull_request
check if the environment has privileges
0s
build and push gatk docker to artifacts
0s
Validate script WDLs using womtools
50s
Validate generated WDLs using womtools
13m 8s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
11 errors and 13 warnings
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build and push gatk docker to artifacts
This request has been automatically failed because it uses a deprecated version of `actions/upload-artifact: v3`. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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Java 17.0.6+10 build and test cloud
This request has been automatically failed because it uses a deprecated version of `actions/upload-artifact: v3`. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
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Java 17.0.6+10 build and test unit
This request has been automatically failed because it uses a deprecated version of `actions/upload-artifact: v3`. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
|
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Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
|
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Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
|
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Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/setup-gcloud is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/setup-gcloud
|
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Java 17.0.6+10 build and test integration
This request has been automatically failed because it uses a deprecated version of `actions/upload-artifact: v3`. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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WDL test RUN_CNN_WDL on cromwell
Process completed with exit code 1.
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build and push gatk docker to artifacts
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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check if the environment has privileges
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Validate script WDLs using womtools
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Validate generated WDLs using womtools
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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|
Java 17.0.6+10 build and test cloud
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Java 17.0.6+10 build and test unit
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Java 17.0.6+10 build and test integration
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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WDL test RUN_CNN_WDL on cromwell
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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WDL test RUN_M2_WDL on cromwell
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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