VS-1549 Add VAT to integration tests #5025

Job	Run time
Validate generated WDLs using womtools	13m 18s
build and push gatk docker to artifacts	1h 27m 46s
check if the environment has privileges	1s
Validate script WDLs using womtools	53s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	1h 15m 55s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	1h 50m 16s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	2h 14m 42s
WDL test RUN_M2_WDL on cromwell	1h 1m 57s
WDL test RUN_CNN_WDL on cromwell	1h 51m 39s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	1h 33m 19s
Java 17.0.6+10 build and test cloud	26m 2s
Java 17.0.6+10 build and test integration	31m 38s
Java 17.0.6+10 build and test unit	20m 36s
Java 17.0.6+10 test on docker integration	36m 59s
Java 17.0.6+10 test on docker unit	22m 37s
Java 17.0.6+10 test on docker variantcalling	33m 26s
Java 17.0.6+10 test on docker conda	29m 48s
	14h 50m 52s

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