update tests

seqr/views/apis/report_api_tests.py

@@ -447,7 +447,7 @@
     'participant': {
         'internal_project_id': {'data_type': 'reference'},
         'prior_testing': {'data_type': 'enumeration'},
-        'proband_relationship': {'required': True},
+        'proband_relationship': {'required': 'CONDITIONAL (sex = Male)'},
         'reported_race': {'enumerations': ['Asian', 'White', 'Black']},
         'age_at_enrollment': {'data_type': 'date'}
     },
@@ -717,7 +717,7 @@ def test_gregor_export(self, mock_subprocess, mock_temp_dir, mock_open, mock_dat
         ] + [
             'The following tables are required in the data model but absent from the reports: subject, dna_read_data_set',
         ] + [
-            'The following entries are missing required "proband_relationship" in the "participant" table: Broad_HG00732, Broad_HG00733, Broad_NA19678, Broad_NA19679, Broad_NA20870, Broad_NA20872, Broad_NA20874, Broad_NA20875, Broad_NA20876, Broad_NA20881, Broad_NA20888',
+            'The following entries are missing required "proband_relationship" in the "participant" table: Broad_HG00732, Broad_NA19678, Broad_NA20870, Broad_NA20872, Broad_NA20874, Broad_NA20875, Broad_NA20876, Broad_NA20881',
             'The following entries have invalid values for "reported_race" in the "participant" table. Allowed values: Asian, White, Black. Invalid values: Broad_NA19675_1 (Middle Eastern or North African)',
             'The following entries have invalid values for "age_at_enrollment" in the "participant" table. Allowed values have data type date. Invalid values: Broad_NA19675_1 (18)',
             'The following entries have invalid values for "reference_assembly" (from Airtable) in the "aligned_dna_short_read" table. Allowed values have data type integer. Invalid values: NA20888 (GRCh38), VCGS_FAM203_621_D2 (GRCh38)',
@@ -1126,7 +1126,7 @@ def test_family_metadata(self):
             'consanguinity': 'Unknown',
             'condition_id': 'OMIM:615123',
             'known_condition_name': '',
-            'condition_inheritance': '',
+            'condition_inheritance': 'Unknown',
         })
 
         # Test empty project

seqr/views/utils/anvil_metadata_utils.py

@@ -565,5 +565,5 @@ def _format_omim_conditions(conditions):
         'known_condition_name': '|'.join(sorted({o['phenotype_description'] for o in conditions if o.get('phenotype_description')})),
         'condition_inheritance': '|'.join(sorted({
             MIM_INHERITANCE_MAP.get(i, i) for o in conditions if o.get('phenotype_inheritance') for i in o['phenotype_inheritance'].split(', ')
-        }))
+        })) or 'Unknown',
     }