Merge pull request #3976 from broadinstitute/variant-metadata-pull-cl…

…invar-sig properly parse clinvar significance
broadinstitute · Mar 18, 2024 · 517ff36 · 517ff36
2 parents 4cdaa05 + b83121a
commit 517ff36
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/ui/pages/Report/components/VariantMetadata.jsx b/ui/pages/Report/components/VariantMetadata.jsx
@@ -1,7 +1,7 @@
 import React from 'react'
 
 import LoadReportTable from 'shared/components/table/LoadReportTable'
-import { VARIANT_METADATA_COLUMNS } from 'shared/utils/constants'
+import { clinvarSignificance, VARIANT_METADATA_COLUMNS } from 'shared/utils/constants'
 
 const VIEW_ALL_PAGES = [
   { name: 'GREGoR', downloadName: 'GREGoR', path: 'gregor' },
@@ -13,7 +13,7 @@ const COLUMNS = [
   ...VARIANT_METADATA_COLUMNS.slice(0, -1),
   { name: 'allele_balance_or_heteroplasmy_percentage' },
   { name: 'ClinGen allele ID', format: ({ clinvar }) => clinvar?.alleleId },
-  { name: 'ClinVar Clinical Significance', format: ({ clinvar }) => clinvar?.clinicalSignificance },
+  { name: 'ClinVar Clinical Significance', format: ({ clinvar }) => clinvarSignificance(clinvar).pathogenicity },
   { name: 'ClinVar gold star', format: ({ clinvar }) => clinvar?.goldStars },
   { name: 'known_condition_name' },
   { name: 'condition_id' },