Merge pull request #3508 from broadinstitute/hail-backend-twaeks

fix minor issues with hail backend
broadinstitute · Jul 24, 2023 · df88da5 · df88da5
2 parents 8a5f227 + 8d4993a
commit df88da5
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/seqr/utils/search/utils.py b/seqr/utils/search/utils.py
@@ -1,4 +1,5 @@
 from collections import defaultdict
+from copy import deepcopy
 from datetime import timedelta
 
 from seqr.models import Sample, Individual, Project
@@ -197,7 +198,7 @@ def query_variants(search_model, sort=XPOS_SORT_KEY, skip_genotype_filter=False,
 
 
 def _query_variants(search_model, user, previous_search_results, sort=None, num_results=100, **kwargs):
-    search = search_model.variant_search.search
+    search = deepcopy(search_model.variant_search.search)
 
     rs_ids = None
     variant_ids = None

diff --git a/ui/shared/utils/constants.js b/ui/shared/utils/constants.js
@@ -1066,9 +1066,9 @@ export const getPermissionedHgmdClass = (variant, user, familiesByGuid, projectB
     familyGuid => projectByGuid[familiesByGuid[familyGuid].projectGuid].enableHgmd,
   )) && variant.hgmd && variant.hgmd.class
 
-export const clinvarSignificance = (clinvar = {}) => {
-  let { pathogenicity, assertions } = clinvar
-  const { clinicalSignificance } = clinvar
+export const clinvarSignificance = (clinvar) => {
+  let { pathogenicity, assertions } = clinvar || {}
+  const { clinicalSignificance } = clinvar || {}
   if (clinicalSignificance && !pathogenicity) {
     [pathogenicity, ...assertions] = clinicalSignificance.split(/[,|]/)
     if (pathogenicity === 'Pathogenic/Likely_pathogenic/Pathogenic') {