Dev #3573
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Dev #3573
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Collaborator
hanars
commented
Aug 22, 2023
hanars
commented
- All unit test are passing and coverage has not substantively dropped
- No new dependency vulnerabilities have been introduced
- Any changes to the docker image have been vetted for potential vulnerabilities
- If any python requirements are updated, they are noted and here and will be updated before deploying:
- Security patch cryptography
- Any database migrations are noted here, and will be run before deploying:
- Update DB indices for RNA queries
- All major changes are recorded in the changelog, and the changelog has been updated to reflect the latest release
- Any new endpoints are explicitly tested to ensure they are only accessible to correctly permissioned users
- No secrets have been committed
- Any changes to environment variables or secrets are noted here, and will properly configured before deploying:
…roadinstitute/seqr into hail-backend-filter-inheritance
…roadinstitute/seqr into hail-backend-frequency-filter
…oadinstitute/seqr into hail-backend-filter-location
…oadinstitute/seqr into hail-backend-filter-location
Bumps [aiohttp](https://github.com/aio-libs/aiohttp) from 3.8.4 to 3.8.5. - [Release notes](https://github.com/aio-libs/aiohttp/releases) - [Changelog](https://github.com/aio-libs/aiohttp/blob/v3.8.5/CHANGES.rst) - [Commits](aio-libs/aiohttp@v3.8.4...v3.8.5) --- updated-dependencies: - dependency-name: aiohttp dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]>
…ch/aiohttp-3.8.5 Bump aiohttp from 3.8.4 to 3.8.5 in /hail_search
Bumps [cryptography](https://github.com/pyca/cryptography) from 41.0.2 to 41.0.3. - [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst) - [Commits](pyca/cryptography@41.0.2...41.0.3) --- updated-dependencies: - dependency-name: cryptography dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]>
…phy-41.0.3 Bump cryptography from 41.0.2 to 41.0.3
update export parsing for hail backend
…l-backend-filter-inheritance
…l-backend-af-prefilter
…l-backend-comp-het
Hail backend - AF prefilter
…l-backend-comp-het
…tute/seqr into hail-backend-sort
Hail backend - compound het/ recessive search
…l-backend-cache-globals
cache globals for hail backend
…up-ids handle dup individual ids for sample metadata
…4ea498acda2c3bb33 [Snyk] Security upgrade cryptography from 41.0.2 to 41.0.3
…l-backend-sort
…/seqr into hail-backend-gene-counts
…-update Gregor metadata airtable update
Hail backend sort
* add wait_for_routes script * add wait * wait for routes * Add wait_for_routes helper script * Flush out description * Update wait_for_routes
Hail backend gene counts
…on-update Gregor metadata validation update
…riant-file-filtering Gregor metadata called variant file filtering
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