update docker compose due to breaking changes in SILO 0.5 and fix ver…

…sion
cbg-ethz · Jan 29, 2025 · 9520188 · 9520188
1 parent 804259a
commit 9520188
Showing 1 changed file with 5 additions and 9 deletions.
diff --git a/ww_test/docker-compose.yml b/ww_test/docker-compose.yml
@@ -1,6 +1,6 @@
 services:
   lapisOpen:
-    image: ghcr.io/genspectrum/lapis:latest
+    image: ghcr.io/genspectrum/lapis:0.3
     ports:
       - ${LAPIS_PORT}:8080
     command: --silo.url=http://silo:8081
@@ -16,10 +16,10 @@ services:
     stop_grace_period: 0s
 
   silo:
-    image: ghcr.io/genspectrum/lapis-silo:latest
+    image: ghcr.io/genspectrum/lapis-silo:0.5
     ports:
       - 8081:8081
-    command: --api
+    command: api
     volumes:
       - type: bind
         source: ./silo_output
@@ -31,8 +31,8 @@ services:
     stop_grace_period: 0s
 
   siloPreprocessing:
-    image: ghcr.io/genspectrum/lapis-silo:latest
-    command: --preprocessing
+    image: ghcr.io/genspectrum/lapis-silo:0.5
+    command: preprocessing
     mem_limit: 4g
     volumes:
       - type: bind
@@ -47,8 +47,4 @@ services:
         source: ./
         target: /preprocessing/input
         read_only: false
-      - type: bind
-        source: ./database_config.yaml
-        target: /app/database_config.yaml
-        read_only: true
     stop_grace_period: 0s